Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: RNA-Seq Analyses of Chionographis japonica

PROVIDER: PRJEB58123 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR10639473_1.fastq.gz	Fastqsanger.gz
	ERR10639473_2.fastq.gz	Fastqsanger.gz
	ERR10639474_1.fastq.gz	Fastqsanger.gz
	ERR10639474_2.fastq.gz	Fastqsanger.gz
	ERR10639475_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

ChIP-seq of holocentric Chionographis japonica to determine the centromere distribution and genome organization

Project description:To determine the distribution of centromere units in the genome of holocentric Chionographis japonica, we performed CENH3-ChIPseq using the customized species-specific CENH3 antibody. We mixed the chromatins of C. japonica and Secale cereal (inbred line Lo7) to dilute the highly abundant centromeric Chio satellite repeats (16%) in the C. japonica genome before immunoprecipitation. In addition, to determine the large-scale genome organization, we performed ChIPseq by targeting the evolutionarily conserved eu- and heterochromatin-specific histone marks H3K4me2 and H33K9me2

2023-05-08 | GSE228407 | GEO

Project description:Enzymatic Methyl-Seq of Chionographis japonica

| PRJEB58127 | ENA

Project description:Genome sequencing of Chionographis japonica

| PRJEB58129 | ENA

Project description:Whole genome shotgun sequences of Chionographis japonica

| PRJEB58128 | ENA

Project description:Long-read PacBio Sequencing of Chionographis japonica

| PRJEB58125 | ENA

Project description:Chromosome Conformation Capture (Hi-C) sequencing of Chionographis japonica

| PRJEB58124 | ENA

Multi-omics analyses reveal DjTcf4 critical for proper timing of differentiation in planarian regeneration [scATAC_head]

Project description:The blastema is key to forming complete tissues in regenerating Dugesia japonica (D. japonica). However, the dynamic changes in cellular compositions and transcription landscapes in blastema during regeneration are understudied. Here, through genome reannotation, 3D spatial transcriptome construction, scRNA-seq and scATAC-seq analyses of changes in gene expression and chromatin structures, we delineated key transcription factors regulating the developmental trajectories of major cell clusters in the regenerating head. Importantly, we found that the T-cell factor 4 positive (DjTcf4+) cells highly accumulated at wound areas, and its gene network is critical for proper timing of development during regeneration in multiple progenitor cells. Depletion of DjTcf4 and its target genes led to singular eye and/or dull tail phenotypes and delayed regeneration. Taken together, we built multi-omics atlases in D. japonica and revealed noncanonical function of the DjTcf4 network in developmental pattern formation, laying a foundation for studies of regeneration in D. japonica.

2025-09-01 | GSE305723 | GEO

Project description:CENH3-ChIPSeq, H3K4me2-ChIPSeq and H3K9me2-ChIPSeq of Chionographis japonica

| PRJEB58126 | ENA

ChIP-seq of holocentric Chionographis japonica to determine the centromere distribution and genome organization

Project description:ChIP-seq of holocentric Chionographis japonica to determine the centromere distribution and genome organization

| PRJNA949641 | ENA