Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

IdMacRust

ABSTRACT: Machimus rusticus, genomic and transcriptomic data

PROVIDER: PRJEB59367 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR10851508_1.fastq.gz	Fastqsanger.gz
	ERR10851508_2.fastq.gz	Fastqsanger.gz
	ERR10841315.fastq.gz	Fastqsanger.gz
	ERR11242522_1.fastq.gz	Fastqsanger.gz
	ERR11242522_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

idMacRust

Project description:Machimus rusticus

| PRJEB59368 | ENA

Machimus rusticus

Project description:Machimus rusticus overview

| PRJNA973778 | ENA

idMacRust1

Project description:Machimus rusticus genome assembly, idMacRust1

| PRJEB62112 | ENA

idMacAtri

Project description:Machimus atricapillus, genomic and transcriptomic data

| PRJEB50870 | ENA

idMacRust1 alternate haplotype

Project description:Machimus rusticus genome assembly, idMacRust1, alternate haplotype

| PRJEB62113 | ENA

icArhRust

Project description:Arhopalus rusticus (rust pine borer), genomic and transcriptomic data

| PRJEB77492 | ENA

idMacAtri

Project description:Machimus atricapillus

| PRJEB50882 | ENA

Machimus atricapillus

Project description:Machimus atricapillus overview

| PRJNA816246 | ENA

Arhopalus rusticus

Project description:Arhopalus rusticus overview

| PRJNA1146133 | ENA

Tropheryma whipplei proteome - Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme

Project description:Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme. Testing systematic exchanges of nucleotides over long stretches produces inversed RNA pieces (here named “swinger” RNA) differing from their template DNA. These may explain some trashed data. Here analyses of genomic, transcriptomic and proteomic data of the pathogenic Tropheryma whipplei according to canonical genomic, transcriptomic and translational 'rules' resulted in trashing 58.9% of DNA, 37.7% RNA and about 85% of mass spectra (corresponding to peptides). In the trash, we found numerous DNA/RNA fragments compatible with “swinger” polymerization. Genomic sequences covered by «swinger» DNA and RNA are 3X more frequent than expected by chance and explained 12.4 and 20.8% of the rejected DNA and RNA sequences, respectively. As for peptides, several match with “swinger” RNAs, including some chimera, translated from both regular, and «swinger» transcripts, notably for ribosomal RNAs. Congruence of DNA, RNA and peptides resulting from the same swinging process suggest that systematic nucleotide exchanges increase coding potential, and may add to evolutionary diversification of bacterial populations.

2017-12-18 | PXD006238 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data