Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Microbial methanoges-methanotrophs and iron reducers in incubation experiments of sediments from the sea of Galilee

ABSTRACT: Microbial methanoges-methanotrophs and iron reducers in incubation experiments of sediments from the sea of Galilee

PROVIDER: PRJEB59988 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR10906876_1.fastq.gz	Fastqsanger.gz
	ERR10906876_2.fastq.gz	Fastqsanger.gz
	ERR10906878_1.fastq.gz	Fastqsanger.gz
	ERR10906878_2.fastq.gz	Fastqsanger.gz
	ERR10906879_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 14

Similar Datasets

Methanotrophs

Project description:Methanotrophs Raw sequence reads

| PRJNA996764 | ENA

Methanotrophs

Project description:Methanotrophs Raw sequence reads

| PRJNA688132 | ENA

Bacteria and archaea from incubation experiments in the East China Sea and Jiaozhou Bay

Project description:Bacteria and archaea from incubation experiments in the East China Sea and Jiaozhou Bay Raw sequence reads

| PRJNA1004101 | ENA

Biomarker Response of Aerobic Methanotrophs to Methane Oxidation Rates and Short-Term Methane and Oxygen Limitation

Project description:Methanotrophs, which help regulate atmospheric levels of methane, are active in diverse natural and man-made environments. This range of habitats and the feast-famine cycles seen by many environmental methanotrophs suggest that methanotrophs dynamically mediate rates of methane oxidation. Global methane budgets require ways to account for this variability in time and space. Functional gene biomarker transcripts are increasingly being studied to inform the dynamics of diverse biogeochemical cycles. Previously, per-cell transcript levels of the methane oxidation biomarker, pmoA, were found to vary quantitatively with respect to methane oxidation rates in model aerobic methanotroph, Methylosinus trichosporium OB3b. In the present study, these trends were explored for two additional aerobic methanotroph pure cultures, Methylocystis parvus OBBP and Methylomicrobium album BG8. At steady-state conditions, per cell pmoA mRNA transcript levels strongly correlated with per cell methane oxidation across the three methanotrophs across many orders of magnitude of activity (R2 = 0.91). Additionally, genome-wide expression data (RNA-seq) were used to explore transcriptomic responses of steady state M. album BG8 cultures to short-term CH4 and O2 limitation. These limitations induced regulation of genes involved in central carbon metabolism (including carbon storage), cell motility, and stress response.

2021-11-17 | GSE188821 | GEO

Methanotrophs

Project description:Diversity of methanotrophs in Chinese grassland soils

| PRJEB15425 | ENA

Incubation experiments of protistan communities based on treatments of increased water temperatures

Project description:Incubation experiments of protistan communities based on treatments of increased water temperatures Metagenome

| PRJNA1005904 | ENA

TRANSCRIPTOME METHANOTROPHS

Project description:TRANSCRIPTOME METHANOTROPHS Raw sequence reads

| PRJNA975127 | ENA

incubation of high As aquifer sediments

Project description:incubation of high As aquifer sediments Raw sequence reads