Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

BRBseq performed on tumoroids and corresponding renal tumor tissues

ABSTRACT: BRBseq performed on tumoroids and corresponding renal tumor tissues

PROVIDER: PRJEB62035 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR11421548.fastq.gz	Fastqsanger.gz
	ERR11421549.fastq.gz	Fastqsanger.gz
	ERR11421550.fastq.gz	Fastqsanger.gz
	ERR11421551.fastq.gz	Fastqsanger.gz
	ERR11421552.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 14

Similar Datasets

BRBseq performed on tumoroids and corresponding renal tumor tissues

Project description:To evaluate genetic similarities between tumoroids and the corresponding tumor tissues, we performed RNA sequencing of cells for each experimental condition. Since we injected human cancer cells into mice, cancer cells in the tumors were human while microenvironmental cells (i.e. Fibroblasts, Immune cells,…) were derived from mice. Thus, the RNA sequencing datasets generated from ACHN or 786-O tumor tissues (AxM and 7xM) and their respective tumoroids (AxTy and 7xTy) were mapped on human and mouse reference genome.

2023-06-30 | E-MTAB-12928 | biostudies-arrayexpress

Expression data from human glioma tissues and corresponding adjacent non-tumor tissues

Project description:We performed microarray expression profiling to analyze the differentially expressed genes between 5 human glioma tissues and corresponding adjacent non-tumor tissues.

2022-09-16 | GSE209547 | GEO

Expression data from human glioma tissues and corresponding adjacent non-tumor tissues

Project description:We performed microarray expression profiling to analyze the differentially expressed genes between 19 human glioma tissues and corresponding adjacent non-tumor tissues.

2022-01-26 | GSE188256 | GEO

Long-term maintenanance of patient-specific characteristics in tumoroids from six cancer indications

Project description:Tumoroids, sometimes referred to as cancer organoids, are patient-derived cancer cells grown as 3D, self-organized multicellular structures that maintain key characteristics (e.g., genotype, gene expression levels) of the tumors from which they originated. These models have emerged as valuable tools for studying tumor biology, cytotoxicity, and the response of patient-derived cells to cancer therapies. However, the establishment and maintenance of tumoroids have historically been challenging, labor-intensive, and highly variable from lab to lab, hindering their widespread use. Here, we established patient-derived colorectal cancer tumoroid lines in OncoPro Tumoroid Culture Medium and performed RNA profiling of single cells from primary dissociated tumors and the corresponding tumoroids to compare the transcriptomic concordance in primary and OncoPro-derived samples.

2025-01-31 | GSE285457 | GEO

tRF&tiRNA sequencing of human PTC tissues and corresponding paracancer tissues

Project description:tRF&tiRNA sequencing of human PTC tissues and corresponding paracancer tissues

| PRJNA810348 | ENA

Whole-genome RNAsequencing of intestinal organoids and tumoroids

Project description:In order to decipher the molecular responses of normal epithelial cells to the tumor secretome, we obtained the gene expression profiles of wildtype organoids exposed to either WT or tumor conditioned medium, along with the transcriptional signature of the tumoroids from which the corresponding tumor conditioned medium was derived.

2022-05-09 | GSE153160 | GEO

Expression data from human glioma tissues and corresponding adjacent non-tumor tissues

Project description:Expression data from human glioma tissues and corresponding adjacent non-tumor tissues

| PRJNA778739 | ENA

Expression data from human glioma tissues and corresponding adjacent non-tumor tissues

Project description:Expression data from human glioma tissues and corresponding adjacent non-tumor tissues

| PRJNA861392 | ENA

tRF&tiRNA sequencing of human PTC tissues and corresponding paracancer tissues

Project description:Purpose: To study the expression and potential significance of tRF and tiRNA in PTC (Papillary thyroid carcinoma) by sequencing tRF and tiRNA in PTC tissues and corresponding paracancer tissues of thyroid cancer patients. Methods: Four pairs of PTC tissues and paracancer tissues were collected. Small RNA sequencing was performed on Illumina NexSeq instrument. Results: If P ≤ 0.05, fold change > 1.5 as the cutoff, there were 27 up-regulated tRFs & tiRNAs and 20 down-regulated tRFs & tiRNAs. Conclusions: Among the differentially expressed tRFs & tiRNAs, tiRNA-1:34-Lys-CTT-2 and tRF-1:30-Gly-CCC-3 may be the potential novel regulatory factors.

2022-02-26 | GSE197438 | GEO

Cholangiocarcinoma tissues VS. corresponding normal bile duct tissues

Project description:To identify miRNAs differentially expressed in cholangiocarcinoma,3 human cholangiocarcinoma and their corresponding normal bile duct tissues were obtained from 3 patients after operation with postoperative pathological diagnosed perihilar or distal biliary cholangiocarcinoma

2013-06-10 | GSE47764 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data