Project description:SNP matrix of barley collection from german ex-situ genbank IPK.
| PRJEB51851 | ENA
Project description:SNP matrix of barley core set from german ex-situ genbank IPK selected for BPGv2 project.
| PRJEB70778 | ENA
Project description:SNP matrix of barley collection from german ex-situ genbank IPK and ICARDA (International Center for Agricultural Research in the Dry Areas) wheat genebank accessions
Project description:Whole-genome-sequencing performed for 1,110 barley genotypes, including 812 plant genetic resources (288 spring type and 524 winter type) from German Federal ex situ Genebank for Agriculture and Horticultural Crops at the Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), and 298 European elite materials (128 spring type and 170 winter type).
Project description:In this project, we developed a data resource based on the German winter oilseed rape cultivar Express 617. Plants were grown under controlled environmental conditions in the container-based system of the IPK PhenoSphere in 2020-2021. The dataset comprises gene expression data generated by RNA sequencing of different seed tissues across five stages of seed development, spanning early embryo/seed development, seed filling, and seed maturation. In the first stage (pre-storage), whole seeds were analysed. In the later four stages, developing seeds were dissected into four organs/tissues (SC = seed coat, IC = inner cotyledon, OC = outer cotyledon, and RA = radicle). This dataset (mRNA sequencing) is part of a series of multi-omics data generated in the frame of the AVATARS project.
Project description:Near isogenic wheat lines(NILs), differing in the presence of both or none of the FHB-resistance QTL Fhb1 and Qfhs.ifa-5A, have been sequenced using Illumina HiSeq2000 under disease pressure (3, 6, 12, 24, 36, 48 hai) as well as with mock-inoculation, to discern transcriptional differences induced by Fusarium graminearum. The NILs are BC5F2 lines generated from the Mexican Spring wheat line CM-82036, the resistance QTL donor line, as recurrent background and the susceptible German Spring wheat line Remus as the donor of the susceptible QTL alleles.
Project description:Crop-wild geneflow is common when domesticated plants and their wild relatives grow close to each other. The resultant hybrid forms appear as semi-domesticates and were somtimes considered as missing links between crops and their wild progenitors. Wild-growing barleys in Central and Asia, named Hordeum agriocrithon, show hallmark characters of both wild and domesticated forms. 77 wild barley accessions from the collection of the German Federal ex situ genebank hosted at IPK Gatersleben were chosen for genome-wide genotyping. Public WGS data of 315 wild and domesticated were included in the analysis.