Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

16S rRNA and 18S rRNA gene sequences from salt marsh sediment

ABSTRACT: Salt marsh sediment microbial community

PROVIDER: PRJEB66381 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR12080800_1.fastq.gz	Fastqsanger.gz
	ERR12080800_2.fastq.gz	Fastqsanger.gz
	ERR12080801_1.fastq.gz	Fastqsanger.gz
	ERR12080801_2.fastq.gz	Fastqsanger.gz
	ERR12080802_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 120

Similar Datasets

Salt Marsh Sediment PIE-LTER Massachusetts

Project description:Salt Marsh Sediment PIE-LTER Massachusetts Raw sequence reads

| PRJNA812947 | ENA

Little Sippewissett Salt Marsh Sediment Microbial Communities

Project description:Microbial Communities of Little Sippewissett Salt Marsh Sediment

| PRJNA973662 | ENA

Community composition of nitrous oxide related genes and their relationship to nitrogen cycling rates in salt marsh sediments

Project description:Salt marshes provide many key ecosystem services that have tremendous ecological and economic value. One critical service is the removal of fixed nitrogen from coastal waters, which limits the negative effects of eutrophication resulting from increased nutrient supply. Nutrient enrichment of salt marsh sediments results in higher rates of nitrogen cycling and, commonly, a concurrent increase in the flux of nitrous oxide, an important greenhouse gas. Little is known, however, regarding controls on the microbial communities that contribute to nitrous oxide fluxes in marsh sediments. To address this disconnect, we generated microbial community profiles as well as directly assayed nitrogen cycling genes that encode the enzymes responsible for overall nitrous oxide flux from salt marsh sediments. We hypothesized that communities of microbes responsible for nitrogen transformations will be structured by nitrogen availability. Taxa that respond positively to high nitrogen inputs may be responsible for the elevated rates of nitrogen cycling processes measured in fertilized sediments. Our data show that, with the exception of ammonia-oxidizing archaea, the community composition of organisms responsible for production and consumption of nitrous oxide was altered under nutrient enrichment. These results suggest that elevated rates of nitrous oxide production and consumption are the result of changes in community structure, not simply changes in microbial activity.

2018-01-13 | GSE108888 | GEO

salt marsh metagenome

Project description:Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-30 metagenome

| PRJNA539481 | ENA

salt marsh metagenome

Project description:Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-40 metagenome

| PRJNA539482 | ENA

salt marsh metagenome

Project description:Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-20 metagenome

| PRJNA539483 | ENA

salt marsh metagenome

Project description:Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-30 metagenome

| PRJNA539484 | ENA

salt marsh metagenome

Project description:Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-70 metagenome

| PRJNA539485 | ENA

salt marsh metagenome

Project description:Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-10 metagenome

| PRJNA539488 | ENA

salt marsh metagenome

Project description:Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-210 metagenome

| PRJNA539491 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data