Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

DaCruLaev

ABSTRACT: Cruciata laevipes (crosswort), genomic and transcriptomic data

PROVIDER: PRJEB68391 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR12257433.fastq.gz	Fastqsanger.gz
	ERR12257434.fastq.gz	Fastqsanger.gz
	ERR12259859_1.fastq.gz	Fastqsanger.gz
	ERR12259859_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

daCruLaev

Project description:Cruciata laevipes (crosswort)

| PRJEB68392 | ENA

Cruciata laevipes

Project description:Cruciata laevipes overview

| PRJNA1043357 | ENA

idRhaLaev

Project description:Rhamphomyia laevipes, genomic and transcriptomic data

| PRJEB62057 | ENA

daCruLaev1

Project description:Cruciata laevipes (crosswort) genome assembly, daCruLaev1

| PRJEB70271 | ENA

daCruLaev1 alternate haplotype

Project description:Cruciata laevipes (crosswort) genome assembly, daCruLaev1, alternate haplotype

| PRJEB70272 | ENA

cmLunCruc

Project description:Lunularia cruciata (crescent-cup liverwort), genomic and transcriptomic data

| PRJEB57425 | ENA

An ancient symbiotic fungal gene network revealed by comparative transcriptomics [Rirregularis_symbiotic_tissues]

Project description:Purpose: The recent publication of the fungal mutualist R. irregularis genome facilitated transcriptomic studies. We here wanted to understand the large host range of this fungus, throught its gene regulation in divergent plants Methods: mRNA from Medicago truncatula (legume), Brachypodium distachyon (grass) and Lunularia cruciata (liverwort) in association with R. irregularis were sequenced. Reads were mapped on the genome assembly with the software CLC workbench. Fungal gene expression in the different plants was compared to extra radical hyphae as a control. Results: 529, 486 and 523 R. irregularis gene were highly overexpressed (fold change >5 ; FDR <0,05 and experimental value > l10l) in M. truncatula, B. distachyon and L. cruciata, respectively. Among those genes, 262 were induced in all hosts. qPCR validation on 32 genes supported these results in an extended set of hosts (Zea mays spp parviglumis, Pisum sativum, Marchantia paleacea).

2017-09-29 | GSE67926 | GEO

idRhaLaev

Project description:Rhamphomyia laevipes

| PRJEB62058 | ENA

Rhamphomyia laevipes

Project description:Rhamphomyia laevipes overview

| PRJNA1056747 | ENA

Nipponoluciola cruciata

Project description:Luciola cruciata overview

| PRJNA522637 | ENA