Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genomically-suported redefinition of an outbreak in a pediatric unit caused by blaVIM-harboring Klebsiella michiganensis

ABSTRACT: Genomically-suported redefinition of an outbreak in a pediatric unit caused by blaVIM-harboring Klebsiella michiganensis

PROVIDER: PRJEB72727 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR12663067_1.fastq.gz	Fastqsanger.gz
	ERR12663067_2.fastq.gz	Fastqsanger.gz
	ERR12663068_1.fastq.gz	Fastqsanger.gz
	ERR12663068_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 63

Similar Datasets

Transcriptome analysis of Clavibacter michiganensis subsp. michiganensis infected tomato seedlings

Project description:The gram- positive bacterial pathogen Clavibacter michiganensis subsp. michiganensis (Cmm) causes huge economic losses by infecting tomato plants worldwide. Cmm can be spread by contaminated seeds and transplants, penetrating the plant through natural openings or wounds and is transferred through the plant xylem. While in recent years significant progress has been made to elucidate plant responses to pathogenic gram-negative bacteria by gene expression studies, the molecular mechanisms that lead to disease symptoms caused by gram-positive bacteria like Cmm remain elusive. An indigenous virulent Cmm strain isolated from a farm crop of Pomodoro tomatoes in southern Greece was used for the infection of EKSTASIS F1 hybrid tomato seedlings. Here, we present the results of a deep RNA- sequencing (RNA-seq) analysis performed to characterize the dynamic expression profile of tomato genes upon Cmm infection.

2021-08-10 | GSE160971 | GEO

Proteogenomic study of Clavibacter michiganensis subsp. michiganensis strain NCPPB382

Project description:Clavibacter michiganensis subsp. michiganensis is an important Gram-positive phytopathogenic bacteria that causes bacterial wilt and canker in tomato. The genome of the type strain, NCPPB382, has been sequenced and annotated, however comparative genomics suggests that certain regions are under- or misannotated. In order to improve the genome annotation, we have undertaken a proteogenomic study of this important pathogen. Samples were grown in culture and the proteome of the pellet and supernatant were analyzed separately using shotgun HPLC-MS/MS. These proteomics datasets were analyzed and a number of missing gene were found and a number of existing gene calls were modified.

2019-01-31 | PXD006787 | Pride

Clavibacter michiganensis subsp. michiganensis strain:A4758

Project description:Clavibacter michiganensis subsp. michiganensis A4758

| PRJNA477869 | ENA

Clavibacter michiganensis subsp. michiganensis

Project description:Clavibacter michiganensis subsp. michiganensis Genome sequencing and assembly

| PRJNA770121 | ENA

Clavibacter michiganensis subsp. michiganensis strain:1217

Project description:Clavibacter michiganensis subsp. michiganensis strain:1217 Genome sequencing

| PRJNA612743 | ENA

Clavibacter michiganensis subsp. michiganensis strain:CFBP1940

Project description:Genome sequencing of Clavibacter michiganensis subsp. michiganensis CFBP1940

| PRJNA476170 | ENA

Clavibacter michiganensis subsp. michiganensis

Project description:Comparative analysis of Clavibacter michiganensis subsp. michiganensis strains isolated from Uruguayan fields

| PRJNA841598 | ENA

Clavibacter michiganensis subsp. michiganensis strain:CASJ008

Project description:Genome sequence of Clavibacter michiganensis subsp. michiganensis strain CASJ008

| PRJNA331200 | ENA

Clavibacter michiganensis subsp. michiganensis strain:CASJ006

Project description:Genome sequence of Clavibacter michiganensis subsp. michiganensis strain CASJ006

| PRJNA331198 | ENA

Clavibacter michiganensis subsp. michiganensis strain:CASJ007

Project description:Genome sequence of Clavibacter michiganensis subsp. michiganensis strain CASJ007

| PRJNA331199 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data