Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

LUTRI

ABSTRACT: Metagenomic approach to examine respiratory samples from children with lower respiratory tract infections

PROVIDER: PRJEB7391 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR649075.fastq.gz	Fastqsanger.gz
	ERR649076.fastq.gz	Fastqsanger.gz
	ERR649077.fastq.gz	Fastqsanger.gz
	ERR649078.fastq.gz	Fastqsanger.gz
	ERR649079.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 25

Similar Datasets

UTRI

Project description:Metagenomic approach to examine respiratory samples from children with upper respiratory tract infections

| PRJEB7390 | ENA

Bacteria

Project description:Respiratory microbiota in children with severe lower respiratory tract infections.

| PRJNA669463 | ENA

Project description:Respiratory microbiota in children with severe lower respiratory tract infections.

| PRJNA672663 | ENA

Pediatric RTIs

Project description:This series includes 278 microarrays used to detect respiratory viruses in a set of nasopharyngeal lavage specimens from children with respiratory tract infections Objective: To assess the utility of a pan-viral DNA microarray platform (Virochip) in the detection of viruses associated with pediatric respiratory tract infections. Study Design: The Virochip was compared to conventional clinical direct fluorescent antibody (DFA) and PCR-based testing for the detection of respiratory viruses in 278 consecutive nasopharyngeal aspirate samples from 222 children. Results: The Virochip was superior in performance to DFA, showing a 19% increase in the detection of 7 respiratory viruses included in standard DFA panels, and was similar to virus-specific PCR (sensitivity 85-90%, specificity 99%, PPV 94-96%, NPV 97-98%) in the detection of respiratory syncytial virus, influenza A, and rhino-/enteroviruses. The Virochip also detected viruses not routinely tested for or missed by DFA and PCR, as well as double infections and infections in critically ill patients that DFA failed to detect. Conclusions: Given its favorable sensitivity and specificity profile and greatly expanded spectrum of detection, microarray-based viral testing holds promise for clinical diagnosis of pediatric respiratory tract infections. Keywords: viral detection The series includes 278 clinical specimens

2010-05-26 | E-GEOD-10294 | biostudies-arrayexpress

Pediatric RTIs

2008-07-09 | GSE10294 | GEO

Host transcription profile in nasal epithelium and blood of hospitalized children under two years old with Respiratory Syncitial Virus infection [nasopharyngeal swaps]

Project description:Analysis of transcriptional profiles in whole blood and nasopharyngeal swaps from children hospitalized with lower respiratory tract infections at their admission and their discharge, and diagnosed with either RSV or rhinovirus infections. The hypothesis is that this information will contribute to better understand the viral specific immunity and host responses to RSV infection and may suggest leads for the develoment of vaccines and specific treatment.

2017-04-14 | GSE97742 | GEO

Host transcription profile in nasal epithelium and blood of hospitalized children under two years old with Respiratory Syncitial Virus infection [whole blood]

2017-04-14 | GSE97741 | GEO

Project description:Pathogen spectrum of lower respiratory tract infections

| PRJNA1263143 | ENA

viral metagenome

Project description:Metagenomic analysis of respiratory sample from children with with acute respiratory tract infections

| PRJNA283035 | ENA

Haemophilus influenzae

Project description:Causes respiratory tract infections primarily in children

| PRJNA12317 | ENA