Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Streptococcal isolates in Ireland

ABSTRACT: Whole genome sequencing of streptococcal isolates from Ireland

PROVIDER: PRJEB74511 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR12875316_1.fastq.gz	Fastqsanger.gz
	ERR12875316_2.fastq.gz	Fastqsanger.gz
	ERR13030700_1.fastq.gz	Fastqsanger.gz
	ERR13030700_2.fastq.gz	Fastqsanger.gz
	ERR13030800_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 2968

Similar Datasets

Invasive Streptococcal viridans isolates

Project description:Streptococcal isolates obtained from patients with invasive disease

| PRJEB53186 | ENA

Streptococcal genomic isolates associated to necrotising fasciitis (NSTI)

Project description:Streptococcal genomic isolates associated to necrotising fasciitis (NSTI)

| PRJEB34961 | ENA

Streptococcal Sequencing Data

Project description:Streptococcal Sequencing Data

| PRJEB94460 | ENA

Streptococcal species

Project description:Genome sequences of novel Streptococcal species

| PRJEB33418 | ENA

Whole genome sequencing of Mycobacteria in Ireland

Project description:Whole genome sequencing of Mycobacteria in Ireland

| PRJEB74244 | ENA

Ireland Genomes

Project description:Ireland Genomes

| PRJEB63398 | ENA

COMPARATIVE OMICS ANALYSIS OF HISTORICAL AND RECENT ISOLATES OF BORDETELLA PERTUSSIS

Project description:Despite high vaccination coverage, pertussis is on the rise in many countries including Czech Republic. To better understand B. pertussis resurgence we compared the changes in genome structures between Czech vaccine and circulating strains and subsequently, we determined how these changes translated into global transcriptomic and proteomic profiles. The whole-genome sequencing revealed that both historical and recent isolates of B. pertussis display substantial variation in genome organization and cluster separately. The RNA-seq and LC-MS/MS analyses indicate that these variations translated into discretely separated transcriptomic and proteomic profiles. Compared to vaccine strains, recent isolates displayed increased expression of flagellar genes and decreased expression of polysaccharide capsule operon. Czech strains (Bp46, K10, Bp155, Bp318 and Bp6242)exhibited increased expression of T3SS and sulphate metabolism genes when compared to Tohama I. In spite of 50 years of vaccination the Czech vaccine strains (VS67, VS393 and VS401) differ from recent isolates to a lesser extent than from another vaccine strain Tohama I.

2021-09-08 | PXD015184 | Pride

CPE Klebsiella Ireland

Project description:Carbapenamase Producing Klebsiella Ireland

| PRJEB19229 | ENA

Development of Helicobacter pylori microarrays to test pathogenicity of clinical isolates

Project description:To distinguish between Helicobacter pylori isolates that may cause greater disease in patients, we used whole genome expression profiling as a platform to study host-pathogen interactions and identify gene signatures associated with isolates from patients with higher cancer risk.

2013-08-05 | GSE41497 | GEO

Monkeypox virus: Genome sequencing by NVRL Ireland, National Viral Reference Laboratory, University College Dublin, Ireland

Project description:Monkeypox virus: Genome sequencing by NVRL Ireland, National Viral Reference Laboratory, University College Dublin, Ireland, Dublin, Ireland

| PRJEB89353 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data