Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Tomato microbiome assembly and phylogenetic signal

ABSTRACT: Tomato microbiome assembly and phylogenetic signal

PROVIDER: PRJEB74653 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR12867735_1.fastq.gz	Fastqsanger.gz
	ERR12867735_2.fastq.gz	Fastqsanger.gz
	ERR12867736_1.fastq.gz	Fastqsanger.gz
	ERR12867736_2.fastq.gz	Fastqsanger.gz
	ERR12867737_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 126

Similar Datasets

Radiation with reproductive isolation in the near-absence of1 phylogenetic signal

Project description:Radiation without phylogenetic signal

| PRJEB75494 | ENA

Tomato fruit microbiome

Project description:Tomato fruit microbiome Metagenome

| PRJNA1293319 | ENA

Leveraging phylogenetic signal to unravel microbiome function and assembly rules

Project description: Not available

| S-EPMC10618112 | biostudies-literature

Tomato microbiome

Project description:Biotic and abiotic stress factors induce microbiome shifts and enrichment of distinct beneficial bacteria in tomato roots

| PRJEB48124 | ENA

Tomato CRISPR-Edited Microbiome Associated

Project description:Tomato CRISPR-Edited Microbiome Associated Raw sequence reads

| PRJNA1057279 | ENA

Developmentally regulated generation of a systemic signal for long-lasting defence priming in tomato [WGBS]

Project description:Tomato is a major global crop however its production is limited by Botrytis cinerea. Due to the toxicity of post-harvest pesticide application, alternative control methods such as priming are being investigated. Plants were treated with β-aminobutyric (BABA) at two developmental stages and resistance against B. cinerea was tested in fruit tissue and in progenies. DNA methylation and RNA sequencing were conducted to characterise the (epi)genetic changes associated with long-lasting resistance. Grafting experiments were done to assess the systemic nature of this signal, which was further characterised by small RNA (sRNA) sequencing of scions. Only BABA-treated seedlings displayed induced resistance (IR). DNA methylation analysis revealed seedling-specific changes, which occurred in the context of lower basal methylation. BABA-IR was found to be transmissible from primed rootstock to grafted unprimed scions. In these scions, we identified a subset of mobile 24 nt sRNAs associated with primed genes to infection in fruit. Our results demonstrate the functional association of a systemic signal with long lasting IR and priming. Through integrated omics approaches we have identified markers of long-lasting priming in tomato fruit which could also serve as targets for durable resistance in other crops.

2024-11-17 | GSE273942 | GEO