Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Cai xin, lettuce and spinach gene expression atlas

ABSTRACT: Cai xin, lettuce and spinach gene expression atlas

PROVIDER: PRJEB74997 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR12910500_1.fastq.gz	Fastqsanger.gz
	ERR12910500_2.fastq.gz	Fastqsanger.gz
	ERR12910600_1.fastq.gz	Fastqsanger.gz
	ERR12910600_2.fastq.gz	Fastqsanger.gz
	ERR12910501_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 552

Similar Datasets

Cai xin, lettuce and spinach gene expression atlas

Project description:Raw RNAseq data of hydroponically grown crops (cai xin, lettuce, and spinach) subjected under 31 different conditions. Comparative analysis of gene expression across species and stress conditions were carried out.

2024-04-30 | E-MTAB-14018 | biostudies-arrayexpress

irs4 versus CAI-12

Project description:Comparison of expression profiling of irs4 null mutant versus isogenic strain (CAI-12) grown in blood (3 replicates) Two-condition experiment, irs4 null mutant versus CAI-12 wild-type. Biological replicates: 3 irs4 null mutant, 3 wild-type. Two replicates per array.

2012-10-06 | E-GEOD-41330 | biostudies-arrayexpress

Heat stress-responsive proteomics and phosphoproteomics in spinach

Project description:Elevated temperature limits plant growth and reproduction and poses a growing threat to agriculture. Plant heat stress response is highly conserved and fine-tuned in multiple pathways. Spinach (Spinacia oleracea L.) is a cold tolerant but heat sensitive green leafy vegetable. In this study, heat adaptation mechanisms in spinach sibling inbred heat-tolerant line Sp75 were investigated using physiology, proteomics, and phosphoproteomics approaches. The abundance patterns of 911 heat stress-responsive proteins, and phosphorylation level changes of 48 phosphopeptides representing 45 phosphoproteins indicated that heat induced calcium-mediated signaling, ROS homeostasis, endomembrane trafficking, and cross-membrane transport pathways, as well as > 15 transcription regulation factors. Although photosynthesis was inhibited, diverse primary and secondary metabolisms were employed for enhancing thermotolerance, such as glycolysis, pentose phosphate pathway, amino acid metabolism, fatty acid metabolism, nucleotide metabolism, vitamin metabolism, and isoprenoid biosynthesis. These data constitutes a heat stress-responsive metabolic atlas in spinach, which will springboard further investigation into the sophisticated molecular mechanism of plant heat adaptation and inform spinach molecular breeding initiatives.

2018-07-16 | PXD009352 | Pride

irs4 versus CAI-12

Project description:Comparison of expression profiling of irs4 null mutant versus isogenic strain (CAI-12) grown in blood (3 replicates)

2012-10-06 | GSE41330 | GEO

Relating differences in the colonisation potential of verotoxigenic Escherichia coli (VTEC) for plant hosts to wholescale genes in gene expression

Project description:Verotoxigenic Escherichia coli (VTEC) are a leading cause of food-borne illness. Fruit and vegetables are recognised as an important source of the pathogen and can account for ~ 25 % of food-borne VTEC outbreaks, globally. The ability of VTEC to colonise leaves and roots of leafy vegetables, spinach (Spinacia oleracea) and lettuce (Lactuca sativa), was compared. The highest levels of colonisation occurred in the roots and rhizosphere, whereas colonisation of the leaves was lower and significantly different between the species. Colonisation of the leaves of prickly lettuce (L. serriola), a wild relative of domesticated lettuce, was especially poor. Differential VTEC gene expression in spinach extracts was markedly different for three tissue types, with little overlap. Comparison of expression in the same tissue type, cell wall polysaccharides, for lettuce and spinach also showed substantial differences, again with virtually no overlap. The transcriptional response was largely dependent on temperatures that are relevant to plant growth, not warm-blooded animals. The data show that VTEC adaptation to plant hosts and subsequent colonisation potential is underpinned by wholescale changes in gene expression that are specific to both plant tissue type and to the species.

2016-08-01 | E-MTAB-3249 | biostudies-arrayexpress

Relating differences in the colonisation potential of verotoxigenic Escherichia coli (VTEC) for plant hosts to wholescale genes in gene expression (2)

2016-08-01 | E-MTAB-4120 | biostudies-arrayexpress

Bacillus sp. Xin

Project description:Bacillus sp. Xin Genome sequencing and assembly

| PRJNA658725 | ENA

Bacillus sp. Xin

Project description:Bacillus sp. Xin Genome sequencing and assembly

| PRJNA658724 | ENA

Transcriptome profiling of lettuce plants exposed to abiotic stresses

Project description:Lettuce is one of most consumed vegetables globally. This crop is susceptible to abiotic stresses. To understand the molecular mechanisms of stress response in lettuce, global transcriptome analysis was conducted. This analysis revealed distinctive temporal expression patterns among the stress-regulated genes in lettuce plants exposed to abiotic stresses

2023-09-01 | GSE241604 | GEO

RNA-Sequencing of nitrogen-stressed spinach tissue

Project description:Purpose: The goals of this study are to compare differentially expressed transcripts in roots and leaves of spinach plants grown under nitrogen replete and deplete conditions using transcriptome profiling (RNA-seq)

2020-04-08 | GSE145943 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data