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Screening great ape museum specimens for DNA viruses

ABSTRACT: Screening great ape museum specimens for DNA viruses

PROVIDER: PRJEB75038 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR13159300.fastq.gz	Fastqsanger.gz
	ERR13159401.fastq.gz	Fastqsanger.gz
	ERR13159501.fastq.gz	Fastqsanger.gz
	ERR13159601.fastq.gz	Fastqsanger.gz
	ERR13159402.fastq.gz	Fastqsanger.gz

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Screening great ape museum specimens for DNA viruses.

Project description:Natural history museum collections harbour a record of wild species from the past centuries, providing a unique opportunity to study animals as well as their infectious agents. Thousands of great ape specimens are kept in these collections, and could become an important resource for studying the evolution of DNA viruses. Their genetic material is likely to be preserved in dry museum specimens, as reported previously for monkeypox virus genomes from historical orangutan specimens. Here, we screened 209 great ape museum specimens for 99 different DNA viruses, using hybridization capture coupled with short-read high-throughput sequencing. We determined the presence of multiple viruses within this dataset from historical specimens and obtained several near-complete viral genomes. In particular, we report high-coverage (> 18-fold) hepatitis B virus genomes from one gorilla and two chimpanzee individuals, which are phylogenetically placed within clades infecting the respective host species.

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Assessing the hidden potential of beeswax specimens in Natural History Museum collections

Project description:Natural history museum specimens of historical honeybees have been successfully used to explore the genomic past of the honeybee, indicating fast and rapid changes between historical and modern specimens, possibly as a response to current challenges. In our study we explore a potential untapped archive from natural history collections - specimens of beeswax. We examine an Apis mellifera mellifera queen cell specimen from the 19th century. The intact and closed cell was analysed by X-ray Computed Tomography (CT) to reveal a perfectly preserved queen bee inside her cell. Subsequently, a micro-destructive approach was used to evaluate the possibility of protein extraction from the cell. Our results show that studies on specimens such as these provide valuable information about the past rearing of queens, their diet and development, which is relevant for understanding current honeybee behaviour. In addition we evaluate the feasibility of using historical beeswax as a biomolecular archive for ancient proteins to study honeybees.

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