Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

JaDenCyli

ABSTRACT: Dendrogyra cylindrus (pillar coral)

PROVIDER: PRJEB75886 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR13158722.fastq.gz	Fastqsanger.gz
	ERR13158723.fastq.gz	Fastqsanger.gz
	ERR13148288_1.fastq.gz	Fastqsanger.gz
	ERR13148288_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 7

Similar Datasets

jaDenCyli1

Project description:Dendrogyra cylindrus (pillar coral) genome assembly, jaDenCyli1

| PRJEB76635 | ENA

jaDenCyli

Project description:Dendrogyra cylindrus (pillar coral), genomic and transcriptomic data

| PRJEB75885 | ENA

jaDenCyli1 alternate haplotype

Project description:Dendrogyra cylindrus (pillar coral) genome assembly, jaDenCyli1, alternate haplotype

| PRJEB76634 | ENA

Dendrogyra cylindrus

Project description:Dendrogyra cylindrus overview

| PRJNA1125108 | ENA

Project description:Microbiome of Dendrogyra cylindrus (Pillar Coral) polyps from the Florida Reef Tract under in situ and ex situ conditions

| PRJNA1152490 | ENA

Project description:Genomes of the Caribbean reef-building corals, Colpophyllia natans, Dendrogyra cylindrus and Siderastrea siderea

| PRJNA982825 | ENA

RNA-sequencing of Adult Mouse Pillar and Deiters’ Supporting Cells of the Organ of Corti

Project description:To understand the basic biological properties of supporting cells of the mammalian inner ear, we examined the transcriptome of adult pillar and Deiters’ cells. Morphologically distinct pillar and Deiters’ cells were isolated from the organ of Corti from adult CBA/J mice. One thousand pillar and Deiters’ cells were separately collected for each biological replicate, using the suction pipette technique. RNA sequencing of three biological replicates, each with two technical repeats, was performed. The resulting sequenced reads were mapped. Comparisons between pillar cells and Deiters’ cells allow identification of enriched genes, as well as differentially expressed genes that result in cellular specialization. Our dataset provides an extensive resource for understanding the molecular mechanisms underlying morphology, function, and pathology of adult mouse pillar and Deiters’ cells.

2018-08-03 | GSE111347 | GEO

Project description:Dendrogyra Microbiomes

| PRJNA1189597 | ENA

Alteration of TAC1 expression in Prunus species leads to pleiotropic shoot phenotypes

Project description:Prunus persica (peach) trees carrying the ‘Pillar’ or ‘Broomy’ trait (br) have vertically oriented branches caused by loss of function mutations in a gene called TILLER ANGLE CONTROL 1 (TAC1). TAC1 encodes a protein in the IGT gene family that includes LAZY1 and DEEPER ROOTING 1 (DRO1), which regulat lateral branch and root orientations, respectively. Here, we found that some of the native TAC1 alleles in the hexaploid plum species Prunus domestica, which has a naturally more upright stature, contained a variable length trinucleotide repeat within the same exon 3 region previously found to be disrupted in pillar peach trees. RNAi silencing of TAC1 in plum resulted in trees with severely vertical branch orientations similar to those in pillar peaches but with an even narrower profile. In contrast, PpeTAC1 over-expression in plum led to trees with wider branch angles and more horizontal branch orientations. Pillar peach trees and transgenic plum lines exhibited pleiotropic phenotypes including differences in trunk and branch diameter, stem growth, and twisting branch phenotypes. Expression profiling of pillar peach trees revealed differential expression of numerous genes associated with biotic and abiotic stress, hormone responses, plastids, reactive oxygen, and secondary and cell wall metabolism. Collectively, the data provide important clues for understanding TAC1 function and show that alteration of TAC1 expression may have broad applicability to agricultural and ornamental tree industries.

2018-04-04 | GSE112649 | GEO

Project description:Symbiodiniaceae assemblage shift during annual thermal stress in pillar coral

| PRJNA513329 | ENA