Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Marine sediment microbiomes

ABSTRACT: Marine sediment microbiomes in East Siberian Sea

PROVIDER: PRJEB76672 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR13294526_1.fastq.gz	Fastqsanger.gz
	ERR13294526_2.fastq.gz	Fastqsanger.gz
	ERR13294527_1.fastq.gz	Fastqsanger.gz
	ERR13294527_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 133

Similar Datasets

Sediment samples of East Siberian Sea

Project description:Sediment samples of East Siberian Sea Raw sequence reads

| PRJNA753983 | ENA

Arctic Sediments, Siberian Sea

Project description:Arctic Sediments, Siberian Sea Raw sequence reads

| PRJNA1264051 | ENA

Marine sediment microbiomes

Project description:Marine sediment microbiomes in ARAON Mounds of Chukchi Sea

| PRJEB70288 | ENA

Metagenomes in the East China Sea

Project description:Metagenomes in the East China Sea

| PRJEB78949 | ENA

Yellow Sea and East China Sea Prokaryotic Composition

Project description:Yellow Sea and East China Sea Prokaryotic Composition Genome sequencing and assembly

| PRJNA1418192 | ENA

Enzyme adaptation to habitat thermal legacy shapes the thermal plasticity of marine microbiomes

Project description:Microbial communities respond to temperature with physiological adaptation and compositional turnover. Whether thermal selection of enzymes explains marine microbiome plasticity in response to temperature remains unresolved. By quantifying the thermal behaviour of seven functionally-independent enzyme classes (esterase, extradiol dioxygenase, phosphatase, beta-galactosidase, nuclease, transaminase, and aldo-keto reductase) in native proteomes of marine sediment microbiomes from the Irish Sea to the southern Red Sea, we record a significant effect of the mean annual temperature (MAT) on enzyme’s response (R2, 0.51–0.80, p < 0.01 in all cases). Activity and stability profiles of 228 esterases and 5 extradiol dioxygenases from sediment and seawater across 70 locations worldwide (latitude 62.2°S–16°N, MAT –1.4ºC–29.5ºC) validate this thermal pattern. Modelling the esterase phase transition temperature as a measure of structural flexibility, confirm the observed relationship with MAT. Furthermore, when considering temperature variability in sites with non-significantly different MATs, the broadest range of enzyme thermal behaviour and the highest growth plasticity of the enriched heterotrophic bacteria occur in samples with the widest annual thermal variability. These results indicate that temperature-driven enzyme selection shapes microbiome thermal plasticity and that thermal variability finely tunes such processes and should be considered alongside MAT in forecasting microbial community thermal response

2023-02-07 | PXD039714 | Pride

East China Sea surface seawater samples

Project description:Study of Phytoplankton diversity at East China Sea by 18S V4 sequecing

| PRJNA418995 | ENA

Meninges from mice with different microbiomes

Project description:RNA was extracted from the meninges of mice from either Specific pathogen free or Germ free facilities or from the offspring of mice reconstituted with different human microbiomes.

2020-11-13 | GSE135620 | GEO

Phytoplankton diversity in the East China Sea

Project description:Phytoplankton diversity in the East China Sea Raw sequence reads

| PRJNA682696 | ENA

East mediterranean sea AgNPs Ag mesocosm study

Project description:East mediterranean sea AgNPs Ag mesocosm study Raw sequence reads

| PRJNA906332 | ENA