Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

DdCitColo1 seq data

ABSTRACT: Citrullus colocynthis, genomic and transcriptomic data.

PROVIDER: PRJEB78297 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR12098375.fastq.gz	Fastqsanger.gz
	ERR12098376.fastq.gz	Fastqsanger.gz
	ERR12098377.fastq.gz	Fastqsanger.gz
	ERR12098378.fastq.gz	Fastqsanger.gz
	ERR12083385.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 64

Similar Datasets

ddCitColo_assembly_annotation

Project description:Citrullus colocynthis

| PRJEB78362 | ENA

Citrullus colocynthis

Project description:Citrullus colocynthis overview

| PRJNA391749 | ENA

Citrullus colocynthis

Project description:Citrullus colocynthis Genome sequencing

| PRJNA246706 | ENA

Citrullus colocynthis breed:desert watermelon | cultivar:PI 374216

Project description:Citrullus colocynthis chloroplast genome sequencing

| PRJNA391567 | ENA

Project description:16S Microbiome Profiling of Citrullus colocynthis

| PRJNA1345893 | ENA

ddCitColo1 asm-annot

Project description:Citrullus colocynthis, genome assembly and annotation.

| PRJEB66071 | ENA

Citrullus colocynthis cultivar:PI537277

Project description:Citrullus colocynthis cultivar:PI537277 Genome sequencing and assembly

| PRJNA476359 | ENA

Tropheryma whipplei proteome - Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme

Project description:Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme. Testing systematic exchanges of nucleotides over long stretches produces inversed RNA pieces (here named “swinger” RNA) differing from their template DNA. These may explain some trashed data. Here analyses of genomic, transcriptomic and proteomic data of the pathogenic Tropheryma whipplei according to canonical genomic, transcriptomic and translational 'rules' resulted in trashing 58.9% of DNA, 37.7% RNA and about 85% of mass spectra (corresponding to peptides). In the trash, we found numerous DNA/RNA fragments compatible with “swinger” polymerization. Genomic sequences covered by «swinger» DNA and RNA are 3X more frequent than expected by chance and explained 12.4 and 20.8% of the rejected DNA and RNA sequences, respectively. As for peptides, several match with “swinger” RNAs, including some chimera, translated from both regular, and «swinger» transcripts, notably for ribosomal RNAs. Congruence of DNA, RNA and peptides resulting from the same swinging process suggest that systematic nucleotide exchanges increase coding potential, and may add to evolutionary diversification of bacterial populations.

2017-12-18 | PXD006238 | Pride

Porites lobata, genomic and transcriptomic data

Project description:Porites lobata, genomic and transcriptomic data

| PRJEB51771 | ENA

Porites evermanni, genomic and transcriptomic data

Project description:Porites evermanni, genomic and transcriptomic data

| PRJEB51842 | ENA