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DaLitOffi

ABSTRACT: Lithospermum officinale, genomic and transcriptomic data

PROVIDER: PRJEB79875 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR13670008_1.fastq.gz	Fastqsanger.gz
	ERR13670008_2.fastq.gz	Fastqsanger.gz
	ERR13660051.fastq.gz	Fastqsanger.gz

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daLitOffi

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daLitOffi1 hap1

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Transcriptome-based analysis reveals functional differences in Dendrobium officinale from different growing regions and with different quality levels

Project description:Dendrobium officinale is a common and expensive traditional Chinese medicine used as a medicinal agent and food that has immunoregulatory and anti-inflammatory effects. Methods to authenticate D. officinale are lacking. Although chemical profiles of D. officinale were published, transcriptomic profiling is lacking. Here, we collected D. officinale from two regions (Yunnan and Miandian) and the analogue D. compactum. The Yunnan samples had three different quality levels. All samples were subjected to genome-wide biological response fingerprinting (BioReF) in RAW264.7 cells using RNA sequencing.

2024-04-07 | GSE171632 | GEO

Project description:Chitinophaga (R-73072) mediated alkannin/shikonin biosynthesis in Lithospermum officinale

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A high-quality chromosomal-level reference genome of Dendrobium nobile L. provides new insights into the biosynthesis and accumulation of picrotoxane-type sesquiterpenoid alkaloids

Project description:Transcriptome data of sequencing at both ends of different tissues in Dendrobium officinale

2025-12-26 | GSE254169 | GEO

Dendrobium officinale seed symbiotic germination iTRAQ

Project description:Mycorrhizal fungi colonize orchid seed and induce the germination. This so-called symbiotic germination is a critical developmental process in the lifecycle of all orchids. However, the molecular changes taking place during the orchid seed symbiotic germination still remains largely unknown. To better understand the molecular mechanism of orchid seed germination, we performed comparative transcriptomic and proteomic analysis on Chinese traditional medicinal orchid plants, Dendrobium officinale to explore protein expression change at the different developmental stages between asymbiotic and symbiotic germination and identify the key proteins regulated symbiotic germination of orchid seeds. iTRAQ analysis from 8 samples identified 2256 plant proteins, of which, 308 proteins were differentially expressed across three developmental stages within asymbiotic or symbiotic accession and 229 proteins are differentially expressed in the symbiotic germination compared to asymbiotic germination. 32 proteins are co-upregulated in both proteomic and transcriptomic level for symbiotic germination compared to asymbiotic germination. Our results revealed that symbiotic germination of D. officinale seeds probably shares the common signal pathway with asymbiotic germination during the early germination stage.

2017-05-12 | PXD006102 | Pride

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