Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Null

ABSTRACT: Ski tourism shapes the snow microbiome on ski slopes in the Italian Central Alps

PROVIDER: PRJEB79922 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR13658300_1.fastq.gz	Fastqsanger.gz
	ERR13658300_2.fastq.gz	Fastqsanger.gz
	ERR13658301_1.fastq.gz	Fastqsanger.gz
	ERR13658301_2.fastq.gz	Fastqsanger.gz
	ERR13658302_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 48

Similar Datasets

null

Project description:Seasonal dynamics of Alpine ibex (Capra ibex) gut microbiome in the Central Italian Alps

| PRJEB70425 | ENA

Microbial communities of Morgana Cave

Project description:Dominant Microbial populations in Vermiculations of Morgana Cave, Central Italian Alps

| PRJEB33034 | ENA

Vermiculations of Morgana Cave

Project description:Dominant Microbial populations in Vermiculations of Morgana Cave, Central Italian Alps

| PRJEB32963 | ENA

Microbiome of artificial snow in ski resorts

Project description:Microbiome of artificial snow in ski resorts Raw sequence reads

| PRJNA1336440 | ENA

Genetic characterization of Slovenian indigenous goat breed Dreznica goat

Project description:Local breeds retained unique genetic variability important for adaptive potential especially in light of challenges related to climate change. Our objective was to perform, for the first time, a genome-wide diversity characterization using Illumina GoatSNP50 BeadChip of autochthonous Drežnica goat breed from Slovenia. Genetic diversity analyses revealed that the Slovenian Drežnica goat has a distinct genetic identity and is closely related to the neighboring Austrian and Italian alpine breeds. These results expand our knowledge on phylogeny of goat breeds from easternmost part of the European Alps.

2021-06-05 | GSE176157 | GEO

null

Project description:pathogenic E. coli genomes isolated from italian biosolids

| PRJEB66482 | ENA

Metabarcoding of tardigrades in bryophytes - Italian Alps

Project description:Metabarcoding of tardigrades in Italian Alps: altitudinal gradient

| PRJNA1216760 | ENA

null

Project description:A 15-day biodiversity intervention with horses in a farm system leads to acquisition of health-promoting features in the gut microbiome of 10 urban Italian children

| PRJEB73511 | ENA

null

Project description:PTEN loss shapes macrophage dynamics in ovarian high grade serous carcinoma

| PRJEB67876 | ENA

Cistrome analysis of SKI and RUNX1 in HL60

Project description:SKI is a transcriptional co-regulator and overexpressed in various human tumors, for example in acute myeloid leukemia (AML). SKI contributes to the origin and maintenance of the leukemic phenotype. Here we use ChIP-seq and RNA-seq to identify the epigenetic alterations induced by SKI overexpression in AML cells. We show that approximately two thirds of differentially expressed genes are up-regulated upon SKI deletion, of which nearly 50% harbour SKI binding sites in their proximity, primarily in enhancer regions. Gene ontology analysis reveals that many of the differentially expressed genes are annotated to hematopoietic cell differentiation and inflammatory response, corroborating our finding that SKI deletion causes a release of the myeloid differentiation block in HL60 cells. We find that SKI peaks are enriched for RUNX1 consensus motifs, particularly in up-regulated SKI targets. RUNX1 ChIP-seq demonstrates that nearly 70% of RUNX1 binding sites overlap with SKI peaks, mainly at enhancer regions. SKI and RUNX1 co-occupy the same genomic sites and cooperate in gene silencing. Our work demonstrates for the first time on a genome-wide scale the predominant co-repressive function of SKI in AML cells and uncovers the transcription factor RUNX1 as an important mediator of SKI-dependent transcriptional repression.

2018-02-07 | GSE107553 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data