Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Water Scarcity Interdiscplinary Project

ABSTRACT: Harnessing eDNA Metabarcoding to Monitor Species Diversity in Water Bunds: Insights from Laikipia, Kenya

PROVIDER: PRJEB81366 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Towards functional profiling for eDNA based monitoring in coastal environments: a comparison of three approaches

Project description:Monitoring microbial communities can aid in understanding the state of these habitats. Environmental DNA (eDNA) techniques provide efficient and comprehensive monitoring by capturing broader diversity. Besides structural profiling, eDNA methods allow the study of functional profiles, encompassing the genes within the microbial community. In this study, three methodologies were compared for functional profiling of microbial communities in estuarine and coastal sites in the Bay of Biscay. The methodologies included inference from 16S metabarcoding data using Tax4Fun, GeoChip microarrays, and shotgun metagenomics.

2024-04-14 | E-MTAB-13075 | biostudies-arrayexpress

Pearl River Estuary water samples

Project description:Species diversity of fish eDNA metabarcoding for water samples in Pearl River Estuary

| PRJNA806485 | ENA

Project description:eDNA metabarcoding to monitor freshwater systems in northwestern Italy

| PRJNA1175355 | ENA

lake water metagenome

Project description:eDNA metabarcoding of communities under agricultural stress

| PRJNA780792 | ENA

Transcriptomic profiling permits the identification of pollutant sources and effects in ambient water samples

Project description:The delta smelt (Hypomesus transpacificus) is a pelagic fish species endemic to the Sacramento-San Joaquin Estuary in Northern California, listed as endangered under both the USA Federal and Californian State Endangered Species Acts and acts as an indicator of ecosystem health in its habitat range. Interrogative tools are required to successfully monitor effects of contaminants upon the delta smelt, and to research potential causes of population decline in this species. We used microarray technology to investigate genome-wide effects in 47-day old larvae after a 7-day exposure to ambient water samples from the Sacramento River at a monitoring field station (Hood) situated 8 miles downstream of the Sacramento regional Wastewater Treatment Plant. Genomic assessments were carried out on surviving organisms and contrasted to laboratory controls.

2012-09-20 | GSE40991 | GEO

Project description:Metabarcoding of fish species using eDNA

| PRJNA1199188 | ENA

Project description:Water eDNA metabarcoding, raw sequence data

| PRJNA783376 | ENA

Transcriptomic insight into viviparous growth in water lily

Project description:Here We revealed the complex mechanism of viviparity in water lily. The transcriptomic signatures identified in this pathway are important basis for future breeding and research of viviparity in water lily and other plant species.

2021-12-31 | GSE164888 | GEO

Water sample collected from ponds

Project description:Monitoring community of newts in urban area using eDNA metabarcoding - Demultiplexed sequences from water samples

| PRJNA761253 | ENA

seawater metagenome

Project description:MiFish eDNA metabarcoding of deep-sea water

| PRJDB13328 | ENA