Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

IlPyrCing

ABSTRACT: Pyrausta cingulata, genomic and transcriptomic data

PROVIDER: PRJEB81615 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR13907228_1.fastq.gz	Fastqsanger.gz
	ERR13907228_2.fastq.gz	Fastqsanger.gz
	ERR13900450.fastq.gz	Fastqsanger.gz
	ERR14986719_1.fastq.gz	Fastqsanger.gz
	ERR14986719_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

ilPyrCing

Project description:Pyrausta cingulata

| PRJEB81616 | ENA

Pyrausta cingulata

Project description:Pyrausta cingulata overview

| PRJNA1188269 | ENA

ilPyrNigr

Project description:Pyrausta nigrata, genomic and transcriptomic data

| PRJEB59801 | ENA

ilPyrAura

Project description:Pyrausta aurata, genomic and transcriptomic data

| PRJEB63417 | ENA

idVilCing

Project description:Villa cingulata (downland villa beefly), genomic and transcriptomic data

| PRJEB57893 | ENA

ilPyrDesp

Project description:Pyrausta despicata (straw-barred pearl), genomic and transcriptomic data

| PRJEB65669 | ENA

ilPyrPurp

Project description:Pyrausta purpuralis (common purple and gold), genomic and transcriptomic data

| PRJEB65709 | ENA

ilPyrNigr

Project description:Pyrausta nigrata

| PRJEB59802 | ENA

ilPyrAura

Project description:Pyrausta aurata

| PRJEB63418 | ENA

Tropheryma whipplei proteome - Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme

Project description:Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme. Testing systematic exchanges of nucleotides over long stretches produces inversed RNA pieces (here named “swinger” RNA) differing from their template DNA. These may explain some trashed data. Here analyses of genomic, transcriptomic and proteomic data of the pathogenic Tropheryma whipplei according to canonical genomic, transcriptomic and translational 'rules' resulted in trashing 58.9% of DNA, 37.7% RNA and about 85% of mass spectra (corresponding to peptides). In the trash, we found numerous DNA/RNA fragments compatible with “swinger” polymerization. Genomic sequences covered by «swinger» DNA and RNA are 3X more frequent than expected by chance and explained 12.4 and 20.8% of the rejected DNA and RNA sequences, respectively. As for peptides, several match with “swinger” RNAs, including some chimera, translated from both regular, and «swinger» transcripts, notably for ribosomal RNAs. Congruence of DNA, RNA and peptides resulting from the same swinging process suggest that systematic nucleotide exchanges increase coding potential, and may add to evolutionary diversification of bacterial populations.

2017-12-18 | PXD006238 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data