Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ALTAR_SHRT_Ecoli

ABSTRACT: ALTAR: Uro-associated E. coli Short-Read Genome Analysis

PROVIDER: PRJEB85317 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR14226100.fastq.gz	Fastqsanger.gz
	ERR14226100_1.fastq.gz	Fastqsanger.gz
	ERR14226100_2.fastq.gz	Fastqsanger.gz
	ERR14226200.fastq.gz	Fastqsanger.gz
	ERR14226200_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 573

Similar Datasets

ALTAR_SHRT_Ecoli

Project description:ALTAR: Uro-associated E. coli Long-Read Genome Analysis

| PRJEB85595 | ENA

AnTIC_Ecoli

Project description:AnTIC: Uro-associated E. coli Genome Analysis

| PRJEB39670 | ENA

Proteome of the snow alga Chloromonas typhlos

Project description:a chromosome-level nuclear genome and organelle genomes of the alpine snow alga Chloromonas typhlos were sequenced and assembled by integrating short- and long-read sequencing and proteogenomic strategy

| PXD056928 |

High-Quality Genome Assembly, Metabolome, Pangenome, and Metabolic Models of Megasphaera hexanoica KCCM 43214T

Project description:<p class='ql-align-justify'>Megasphaera hexanoica KCCM 43214T, isolated from cow rumen, is capable of producing medium-chain carboxylic acids such as n-caproate and n-caprylate. In this study, we present a high-quality genome assembly, along with intracellular metabolomic profiling and pangenomic analysis. Illumina sequencing generated 2.3 Mbp from 15,293,634 reads with a GC content of 49.5%, while PacBio HiFi sequencing produced 331.5 Mbp across 45,266 reads, with an average read length of 7,323 bp and a HiFi read N50 of 8,214 bp. Hybrid assembly of short and long reads resulted in a single 2.88 Mbp contig, containing 2,075-2,083 unique genes. A genome-scale metabolic model was constructed, to evaluate its metabolic capabilities under specific growth conditions. Intracellular metabolomic analysis of cells grown in fructose medium and lactate medium revealed key metabolic activities associated with chain elongation. Pangenomic analysis across nine annotated genomes identified 6,721 orthologous gene using OrthoMCL, emphasizing the genetic and functional diversity within the Megasphaera genus. This dataset offers valuable insights into the metabolism and biotechnological potential of M. hexanoica KCCM 43214T.</p>

2026-04-03 | MTBLS14019 | MetaboLights

Set7: ERCC bulk short-read RNA-seq by Illumina NextSeq platform, additional samples

Project description:DNA sequencing is a critical tool in modern biology. Over the last two decades, it has been revolutionized by the advent of massively parallel sequencing, leading to significant advances in genome and transcriptome sequencing of various organisms. Nevertheless, challenges such as accuracy, lack of competitive options and prohibitive costs associated with high throughput parallel short-read sequencing persist. Here, we conduct a comparative analysis between the Element Biosciences AVITI platform and its counterpart the Illumina NextSeq platform, testing DNA and RNA short-read sequencing, as well as synthetic long-read sequencing for single cells and RNA transcripts.

2024-08-19 | GSE269801 | GEO