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LpTriAest

ABSTRACT: Triticum aestivum (bread wheat), genomic and transcriptomic data

PROVIDER: PRJEB85734 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR14375731.fastq.gz	Fastqsanger.gz
	ERR14375732.fastq.gz	Fastqsanger.gz
	ERR14375733.fastq.gz	Fastqsanger.gz
	ERR14375734.fastq.gz	Fastqsanger.gz
	ERR14375735.fastq.gz	Fastqsanger.gz

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RNA-seq analysis of bread wheat grown under hydroponic Fe deficient conditions

Project description:Bread wheat (Triticum aestivum L., cv. Fielder) plants were grown under iron (Fe) deficient hydroponic conditions to analyise transcriptomic changes in leaf and root tissue.

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Project description:Allohexaploid bread wheat (Triticum aestivum, L.) provides ~ 20% of calories consumed by humans. Hitherto lack of genome sequence for the three homoelogous and highly similar bread wheat genomes (A, B and, D) impeded expression analysis of the grain transcriptome. We used novel genome information to analyze the cell type specific expression of homeologous genes in the developing wheat grain.

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Project description:Assemblies of Triticum aestivum (bread wheat) genomic and transcriptomic data.

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mRNA-Seq for homoeologous gene expression analysis in hexaploid bread wheat

Project description:Bread wheat (Triticum aestivum) has a large, complex and hexaploid genome consisting of A, B and D homoeologous chromosome sets. Therefore each wheat gene potentially exists as a trio of A, B and D homoeoalleles, each of which may contribute differentially to wheat phenotypes. We describe a novel approach combining wheat cytogenetic resources (chromosome substitution ânullisomic-tetrasomicâ lines) with next generation deep sequencing of gene transcripts (RNA-seq), to directly and accurately identify homoeologue-specific single nucleotide variants and quantify the relative homoeoallelic contribution to gene expression. We obtained mRNA-Seq datasets from non-normalized cDNA libraries created from shoot and root tissues of the euploid bread wheat cultivar Chinese Spring, from which the nullitetra lines are derived, from complete sets of chromosome 1 and 5 nullitetras, and from extant relatives of the diploid A (Triticum urartu) and D (Aegilops tauschii) genome donors, herein referred to as A and D genome diploids

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lpTriAest

Project description:Triticum aestivum (bread wheat)

| PRJEB85735 | ENA

Project description:Triticum aestivum (bread wheat)

| PRJNA1097470 | ENA

Transcriptomic and Co-expression Network Analyses on Diverse Wheat Landraces Identifies Candidate Master Regulators of the Response to Early Drought

Project description:More than four billion people rely on bread wheat (Triticum aestivum L.) as a major constituent of their diet. However, the changing climate threatens wheat production, with periods of intense drought stress already causing widespread wheat yield losses. Much of the research into the wheat drought response has centred on the response to drought events later in development, during anthesis or grain filling. But as the timing of periods of drought stress become increasingly unpredictable, a more complete understanding of the response to drought during early development is also needed. Here, we utilized the YoGI landrace panel to identify the key genes regulating processes such as, stomatal opening, stomatal closing, stomatal morphogenesis and stress hormone signalling related to drought stress.

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Wheat Freeze-Tolerance

Project description:Comparison of gene expression levels in non-hardened (NH), cold-hardened (CH) and subzero-hardened (SZH) Triticum aestivum L. cv Jackson crowns with Affymetrix GeneChip Barley Genome Array. Keywords = wheat Keywords = crowns Keywords = cold tolerance Keywords = freezing resistance Keywords = Triticum aestivum L. cv Jackson Keywords: repeat sample

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Heat tolerance mechanisms in bread wheat: Insights from flag leaves and spike tissues.

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