Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

UcPenCapi1.metagenome

ABSTRACT: Penicillus capitatus (green algae) algae metagenome assembly, ucPenCapi1.metagenome

PROVIDER: PRJEB87018 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ucPenCapi1.Aggregatilineales_1.1.primary.fa.gz	Other
	ucPenCapi1.Aliiroseovarius_sp_2.1.primary.fa.gz	Other
	ucPenCapi1.Aliiroseovarius_sp_3.1.primary.fa.gz	Other
	ucPenCapi1.Alphaproteobacteria_1.1.primary.fa.gz	Other

Items per page:

1 - 5 of 120

Similar Datasets

ucPenCapi

Project description:Penicillus capitatus (green algae)

| PRJEB87012 | ENA

ucPenCapi

Project description:Penicillus capitatus (green algae), genomic and transcriptomic data

| PRJEB87011 | ENA

ucPenLamo1.metagenome

Project description:Penicillus lamourouxii algae metagenome assembly, ucPenLamo1.metagenome

| PRJEB88245 | ENA

Penicillus capitatus

Project description:Penicillus capitatus overview

| PRJNA1243536 | ENA

Soil metagenome from avocado orchards in Channybearup, Western Australia in 2024

Project description:Metagenome data from soil samples were collected at 0 to 10cm deep from 2 avocado orchards in Channybearup, Western Australia, in 2024. Amplicon sequence variant (ASV) tables were constructed based on the DADA2 pipeline with default parameters.

2025-06-15 | GSE298403 | GEO

Project description:Green Algae

| PRJNA608074 | ENA

uoEpiScrs1.metagenome

Project description:algae metagenome genome assembly, uoEpiScrs1.metagenome

| PRJEB70579 | ENA

ucPseBory1.metagenome

Project description:algae metagenome genome assembly, ucPseBory1.metagenome

| PRJEB64282 | ENA

Riboseq and RNAseq in embryophyte mutants with assembly defects in photosynthetic complexes

Project description:In the model green alga Chlamydomonas (Chlamydomonas reinhardtii), the synthesis of several chloroplast-encoded photosynthetic subunits is feedback-regulated by the assembly state of the respective protein complex. This regulation is known as control by epistasy of synthesis (CES) and matches protein synthesis with the requirements of protein complex assembly in photosystem II (PSII), the cytochrome b6f complex (Cyt b6f), photosystem I (PSI), ATP synthase and Rubisco . In embryophytes, however, CES was only described to coordinate synthesis of the large and small subunits of Rubisco, raising the question if additional CES mechanisms exist in land plants or if stoichiometric photosynthetic protein accumulation is only achieved by the wasteful degradation of excess subunits. We systematically examined suitable tobacco and Arabidopsis mutants with assembly defects in PSII, PSI, Cyt b6f complex, ATP synthase, NDH (NAD(P)H dehydrogenase-like) complex and Rubisco for feedback regulation. Thereby, we validated the CES in Rubisco and uncovered translational feedback regulation in PSII, involving psbA, psbB, psbD and psbH and in Cyt b6f, connecting PetA and PetB protein synthesis. Remarkably, some of these feedback regulation mechanisms are not conserved between the green alga and embryophytes. Our data do not provide any evidence for CES in PSI, ATP synthase or NDH complex assembly in embryophytes. In addition, our data disclose translational feedback regulation adjusting PSI levels with PSII accumulation. Overall, we discovered commonalities and differences in assembly-dependent feedback regulation of photosynthetic complexes between embryophytes and green algae.

2025-07-01 | GSE286011 | GEO

Chlamydomonas reinhardtii

Project description:Unicellular green algae

| PRJNA12258 | ENA