Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Haplotype 2 resolved genome assembly for Linum grandiflorum

ABSTRACT: Haplotype 2 assembly for Linum grandiflorum

PROVIDER: PRJEB87191 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Haplotype 1 resolved genome assembly for Linum grandiflorum

Project description:Haplotype 1 assembly for Linum grandiflorum

| PRJEB87190 | ENA

Primary genome assembly for Linum grandiflorum

Project description:Assembly for Linum grandiflorum

| PRJEB87189 | ENA

Haplotype 1 resolved genome assembly for Linum perenne

Project description:Haplotype 1 assembly for Linum perenne

| PRJEB87194 | ENA

Haplotype 2 resolved genome assembly for Linum perenne

Project description:Haplotype 2 assembly for Linum perenne

| PRJEB87195 | ENA

CRISPR-based targeted haplotype-resolved assembly of a megabase region [EPIC]

Project description:Constructing high-quality haplotype-resolved genome assemblies has substantially improved the ability to detect and characterize genetic variants. A targeted approach providing readily access to the rich information from haplotype-resolved genome assemblies will be appealing to groups of basic researchers and medical scientists focused on specific genomic regions. Here, using the 4.5 megabase, notoriously difficult-to-assemble major histocompatibility complex (MHC) region as an example, we demonstrated an approach to construct haplotype-resolved assembly of the targeted genomic region with the CRISPR-based enrichment. Compared to the results from haplotype-resolved genome assembly, our targeted approach achieved comparable completeness and accuracy with reduced computing complexity, sequencing cost, as well as the amount of starting materials. Moreover, using the targeted assembled personal MHC haplotypes as the reference both improves the quantification accuracy for sequencing data and enables allele-specific functional genomics analyses of the MHC region. Given its highly efficient use of resources, our approach can greatly facilitate population genetic studies of targeted regions, and may pave a new way to elucidate the molecular mechanisms in disease etiology.

2022-11-15 | GSE192501 | GEO

CRISPR-based targeted haplotype-resolved assembly of a megabase region [WGBS]

2022-11-15 | GSE192499 | GEO

Primary genome assembly for Linum perenne

Project description:Assembly for Linum perenne

| PRJEB87192 | ENA

Transcriptome analysis of chrysanthemum (Dendranthema grandiflorum) in response to low temperature stress

Project description:We used the RNA-Seq platform to perform a de novo transcriptome assembly to analyze chrysanthemum (Dendranthema grandiflorum) transcription response to low temperature. Using Illumina sequencing technology, a total of 86,444,237 high-quality clean reads and 93,837 unigenes were generated from four libraries: T01, controls; T02, 4 ℃ cold acclimation (CA) for 24 h; T03, -4 ℃ freezing treatments for 4 h with prior CA; and T04, -4 ℃ freezing treatments for 4 h without prior CA. In total, 7583 differentially expressed genes (DEGs) of 36462 annotated unigenes were identified.

2018-04-15 | GSE102413 | GEO

Theobroma grandiflorum

Project description:Theobroma grandiflorum Genome sequencing and assembly

| PRJNA691024 | ENA

Chlorogalum grandiflorum

Project description:Chlorogalum grandiflorum Genome sequencing and assembly

| PRJNA1083548 | ENA