Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Vietnamese Bos gaurus reference genome

ABSTRACT: Genome assembly of the Bos gaurus in Vietnam using nanopore sequencing

PROVIDER: PRJEB87431 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Bos gaurus

Project description:Bos gaurus overview

| PRJNA562337 | ENA

Bos gaurus

Project description:Bos gaurus Assembly

| PRJNA562120 | ENA

Bos gaurus

Project description:Bos gaurus Raw sequence reads

| PRJNA974145 | ENA

Bos gaurus

Project description:Bos gaurus Raw sequence reads

| PRJNA1056565 | ENA

Bos gaurus

Project description:Bos gaurus Raw sequence reads

| PRJNA766152 | ENA

Bos gaurus

Project description:Bos gaurus Raw sequence reads

| PRJNA1226407 | ENA

Project description:Genome assembly of the Bos gaurus in Vietnam using nanopore sequencing

| PRJNA1127286 | ENA

Bison bison, Bison bonasus, Bos gaurus, Bos javanicus, Bos frontalis

Project description:Whole-genome sequencing of five species in Bovinae, include Bison bison(American bison), Bison bonasus(European bison or wisent), Bos gaurus(Gaur), Bos javanicus(bali or banteng), Bos frontalis(gayal or mithun). Genome sequencing and assembly

| PRJNA427536 | ENA

The complete mitochondrial genome of Indian gaur, Bos gaurus and its phylogenetic implications.

Project description:The gaur is the largest extant cattle species and distributed across South and Southeast Asia. Around 85% of its current global population resides in India, however there has been a gradual decrease in the gaur population over the last two decades due to various anthropogenic activities. Mitochondrial genome is considered as an important tool for species identification and monitoring the populations of conservation concern and therefore it becomes an obligation to sequence the mitochondrial genome of Indian gaur. We report here for the first time 16,345 bp mitochondrial genome of four Indian gaur sequenced using two different approaches. Mitochondrial genome consisted of 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, and a control region. Among the 37 genes, 28 were positioned on the H-strand and 9 were positioned on the L-strand. The overall base composition appeared to be 33.5% A, 27.2% T, 25.9% C and 13.4% G, which yielded a higher AT content. The phylogenetic analysis using complete mitochondrial genome sequences unambiguously suggested that gaur is the maternal ancestor of domestic mithun. Moreover, it also clearly distinguished the three sub species of B. gaurus i.e. B. gaurus gaurus, B. gaurus readei and B. gaurus hubbacki. Among the three sub species, B. gaurus gaurus was genetically closer to B. gaurus readei as compared to B. gaurus hubbacki. The findings of our study provide an insight into the genetic structure and evolutionary history of Indian gaur.

| S-EPMC7371690 | biostudies-literature

The complete mitochondrial genome of Malayan Gaur (<i>Bos gaurus hubbacki</i>) from Peninsular Malaysia.

Project description:Here, we present the first complete mitochondrial genome of Malayan Gaur (Bos gaurus hubbacki) inferred using next-generation sequencing. The mitogenome is 16,367 bp in length with the structural organization of a typical bovine mitochondrial arrangement comprising 13 protein-coding genes, 21 tRNAs, and 2 rRNAs. No internal stop codon was found in the protein-coding genes. Phylogenetic tree analysis revealed that Malayan gaur is more closely related to Burmese banteng instead of gaur.

| S-EPMC7706526 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data