Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Decoding Microbial Plastic Colonisation: Multi-Omic Insights Into the Fast-Evolving Dynamics of Early-Stage Biofilms

ABSTRACT: Progression of early marine plastisphere composition and function

PROVIDER: PRJEB87616 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR14786845.fastq.gz	Fastqsanger.gz
	ERR14786846.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Decoding Microbial Plastic Colonisation: Multi-Omic Insights Into the Fast-Evolving Dynamics of Early-Stage Biofilms.

Project description: Not available

| S-EPMC11962581 | biostudies-literature

Decoding Microbial Plastic Colonisation: Multi-Omic Insights into the Fast-Evolving Dynamics of Early-Stage Biofilms

Project description:PARTIAL UPLOAD: Metaproteomic dataset pertaining to marine biofilms analysed after growth on low-density polyethylene (LDPE) for 3 (D3) and 7 (D7) days. Four replicates per condition.

| MSV000095986 | MassIVE

A Closer Look at Plastic Colonisation

Project description:The aim of this study was to investigate the plastic colonisation process, to identify the active taxa involved in biofilm formation and the mechanisms used to initiate colonisation. To achieve this, a marine plastisphere characterised by active hydrocarbonoclastic genera was used as the inoculum for a short-term microcosm experiment using virgin low-density polyethylene as the sole carbon source. Following incubation for 1 and 2 weeks (representing early and late colonisation, respectively), a taxonomic and comparative metaproteomic approach was used to explore shifts in diversity and function.

2024-06-14 | MSV000095034 | MassIVE

Conserved nuclear hormone receptors controlling a novel plastic trait target fast-evolving genes expressed in a single cell.

Project description: Not available

| S-EPMC7179942 | biostudies-literature

Decoding interactions between biofilms and DNA nanoparticles.

Project description: Not available

| S-EPMC11871490 | biostudies-literature

Evolving Populations in Biofilms Contain More Persistent Plasmids.

Project description: Not available

| S-EPMC7253198 | biostudies-literature

Evolutionary genomics of fast evolving tunicates.

Project description: Not available

| S-EPMC4122922 | biostudies-literature

Air pollution alters Staphylococcus aureus and Streptococcus pneumoniae biofilms, antibiotic tolerance and colonisation.

Project description: Not available

| S-EPMC6849702 | biostudies-literature

Metaproteomics of plastic biofilms in marine environments

Project description:To characterize the taxonomic and functional diversity of biofilms on plastics in marine environments, plastic pellets (PE and PS, ø 3mm) and wooden pellets (as organic control) were incubated at three stations: at the Baltic Sea coast in Heiligendamm (coast), in a dead branch of the river Warnow in Warnemünde (inlet), and in the Warnow estuary (estuary). After two weeks of incubation, all pellets were frozen for subsequent metagenome sequencing and metaproteomic analysis. Biofilm communities in the samples were compared on multiple levels: a) between the two plastic materials, b) between the individual incubation sites, and c) between the plastic materials and the wooden control. Using a semiquantitative approach, we established metaproteome profiles, which reflect the dominant taxonomic groups as well as abundant metabolic functions in the respective samples.

2021-11-01 | PXD012062 | Pride

Transcriptionally permissive heterochromatin domains emerge from fast-evolving genetic elements

Project description:Histone posttranslational modifications are a main driver for gene regulation, nevertheless, several questions remain unanswered regarding their heritability. The replisome recycles parental histones through the cell cycle, but how this is accomplished in vivo and impacts epigenetic inheritance remains unknown. Here, we show that Caenorhabditis elegans mutants with disrupted replisome-mediated histone recycling display transgenerational defects in RNAi inheritance and fertility. These strains uncovered a particular kind of heterochromatic domain that we called Corrie domains, which are located at the borders of relatively high and low H3K9me3-rich regions and contain gene and AT-rich transposable-element (TE) clusters poised for activation upon deficient H3K9me3 maintenance. Corrie domains are conserved in Mus musculus highlighting an evolutionarily conserved heterochromatic architecture that operates as a hub for regulatory diversity.

2026-03-05 | GSE322636 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data