Project description:The goal of this study is to compare the methylation state of galls formed in Arabidopsis roots infected by Meloidogyne javanica at 14 days post infection compared to uninfected root segments (RC).
Project description:The goal of this study is to compare the methylation state of galls formed in Arabidopsis roots infected by Meloidogyne javanica at 3 days post infection compared to uninfected root segments (RC).
Project description:The goal of this study is to compare the transcriptome profilling (RNA-seq) of galls (G) formed in Arabidopsis roots infected by Meloidogyne javanica at 3 days post infection compared to uninfected root segments (RC).
Project description:This dataset contains the small RNA sequencing analysis of Arabidopsis thaliana roots during the maintenance stage of Meloidogyne javanica-induced galls. Small RNA populations were profiled in galls collected at 14 days post-infection (dpi) and in equivalent uninfected root tissues used as controls. Three independent biological replicates were analyzed per condition to characterize small RNA accumulation patterns associated with nematode feeding site maintenance.
Project description:Giant cells (GCs)formed by meloidogyne javanica 3 days post infection were isolated by microaspiration from the Arabidopsis Col0 galls. Three independent biological replicates were used for hybridisation. The controls for comparisons were vascular cylinder tissues from uninfected root segments at equivalent positions to the galls in the infected roots. RNA extracted directly from either the controls or the GCs were amplified two times with a RNA polimerase linear amplification based approach
Project description:This study investigates transcriptional changes associated with the maintenance stage of nematode-induced feeding sites in Arabidopsis thaliana. RNA-seq analysis was performed on galls induced by Meloidogyne javanica at 14 days post-infection (dpi) and on equivalent non-infected root segments used as controls. Each condition included three independent biological replicates. These data were generated to characterize gene expression changes associated with gall development and maintenance.
2026-06-03 | GSE320192 | GEO
Project description:RNA sequencing of Meloidogyne javanica