Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Metagenome assembly of PRJNA835145 data set (Bacterial and Archaeal diversity in sediments of the Gulf of Mexico)

PROVIDER: PRJEB88933 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR19160657_cleaned.contigs.fa.gz	Other
	SRR19160659_cleaned.contigs.fa.gz	Other
	SRR19160658_cleaned.contigs.fa.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Ammonia oxidizing archaeal community composition in Gulf of Mexico sediments investigated with an amoA functional gene microarray

2013-03-01 | GSE42286 | GEO

Ammonia oxidizing archaeal community composition in Gulf of Mexico sediments investigated with an amoA functional gene microarray

Project description:Ammonia-oxidizing archaeal (AOA) amoA diversity and relative abundance in Gulf of Mexico sediments (0-2 cm) were investigated using a functional gene microarray; a two color array with a universal internal standard Two color array (cy3 and cy5): the universal standard 20 bp oligo (fluoresced with cy5) is printed to the slide with a 70-mer. Environmental DNA sequences (fluoresced with Cy3) within 15% of the 70-mer will bind to it. Signal is the cy3/cy5. Up to four arrays per sample, with two biological replicates made into two targets, each run on duplicate arrays.

2013-03-01 | E-GEOD-42286 | biostudies-arrayexpress

Project description:Bacterial and Archaeal diversity in sediments of the Gulf of Mexico

| PRJNA835145 | ENA

Project description:BACTERIAL AND ARCHAEAL COMMUNITIES FROM SOUTHERN GULF OF MEXICO SEDIMENTS

| PRJNA380895 | ENA

marine metagenome

Project description:Gulf of Mexico water and sediments Metagenome

| PRJNA288120 | ENA

Project description:Microbial diversity in the Eastern Gulf of Mexico sediments

| PRJNA511010 | ENA

Biatriospora sp. CIGOM2_CONDITIONS_20210511

Project description:As part of our investigations on the chemical diversity of organisms from unexplored marine habitats of Mexico, a series of 29 fungal strains isolated from deep-sea sediments (more than 600 m deep) from the Gulf of Mexico were investigated. The antimicrobial potential of their organic extracts from solid cultures grown under the OSMAC approach was assessed against a panel of ESKAPE bacteria and the yeast C. albicans. Chemical studies on the active scaled-up cultures and some small-scale cultures led to the isolation of benzochromenones from Alternaria sp. CIGOM4, benzodiazepines from P. echinulatum CONTIG4, a cytochalsin from Biatriospora sp. CIGOM2, and an imidazopyridoindole from Penicillium sp. CIGOM10. Molecular network analysis by GNPS combined with manual dereplication showed the enormous potential of these fungi to produce bioactive compounds.

2021-10-11 | MSV000088212 | MassIVE

SELECTED_DEEP_SEA_SEDIMENT_FUNGI_CIGOM_20211012

2021-10-12 | MSV000088218 | MassIVE

CIGOM_SELECTED_15_g_20210726_MASSIVE

2021-10-11 | MSV000088217 | MassIVE

Penicillium_echinulatum_CONTIG4_RICE_15_g_SW_CD_200_g_20210824_FILTER

2021-10-11 | MSV000088216 | MassIVE