Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Plant sedDNA metabarcoding from lake surface sediments

ABSTRACT: Plant sedDNA metabarcoding from lake surface sediments in Yakutia, Eastern Siberia

PROVIDER: PRJEB89990 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Plant sedaDNA metabarcoding from Lake Khamra

Project description:Plant sedaDNA metabarcoding from lake core sediments (EN20001) in southwestern Yakutia, Eastern Siberia

| PRJEB94428 | ENA

Headwater Surface Waters/Sediments

Project description:Headwater Surface Waters/Sediments Raw sequence reads

| PRJNA927046 | ENA

microbiome of methane hydrate sediments: Hydrate Ridge

Project description:Gas hydrates, also known as clathrates, are cages of ice-like water crystals encasing gas molecules such as methane (CH4). Despite the global importance of gas hydrates, their microbiomes remain mysterious. Microbial cells are physically associated with hydrates, and the taxonomy of these hydrate-associated microbiomes is distinct from non-hydrate-bearing sites. Global 16S rRNA gene surveys show that members of sub-clade JS-1 of the uncultivated bacterial candidate phylum Atribacteria are the dominant taxa in gas hydrates. The Atribacteria phylogeny is highly diverse, suggesting the potential for wide functional variation and niche specialization. Here, we examined the distribution, phylogeny, and metabolic potential of uncultivated Atribacteria in cold, salty, and high-pressure sediments beneath Hydrate Ridge, off the coast of Oregon, USA, using a combination of 16S rRNA gene amplicon, metagenomic, and metaproteomic analysis. Methods were developed to extract bacterial cellular protein from these sediments, as outlined below. Sample Description Three sediments samples were collected from beneath Hydrate Ridge, off the coast of Oregon, USA. Sediments were cored at ODP site 1244 (44°35.1784´N; 125°7.1902´W; 895 m water depth) on the eastern flank of Hydrate Ridge ~3 km northeast of the southern summit on ODP Leg 204 in 2002 and stored at -80°C at the IODP Gulf Coast Repository. E10H5 sediment is from 68.5 meters below sediment surface interface C1H2 sediment is from 2 meters below sediment surface interface. C3H4 sediment is from 21 meters below sediment surface interface.

2020-01-22 | PXD012479 | Pride

Surface sediments from China marginal seas

Project description:Surface sediments from China marginal seas Targeted loci environmental

| PRJNA517584 | ENA

Surface sediments from China marginal seas

Project description:Surface sediments from China marginal seas Targeted loci environmental

| PRJNA517549 | ENA

Surface sediments from the Yangtze Estuary

Project description:Surface sediments from the Yangtze Estuary Raw sequence reads

| PRJNA935521 | ENA

Surface sediments of the Ross Sea, Antarctica

Project description:Surface sediments of the Ross Sea, Antarctica Raw sequence reads

| PRJNA510520 | ENA

Plant surface

Project description:Plant surface Genome sequencing

| PRJNA674453 | ENA

incubated culture using surface sediments of haima cold seep

Project description:incubated culture using surface sediments of haima cold seep Raw sequence reads

| PRJNA1041595 | ENA

Microorganisms in sediments and on microplastic surface (with lindane)

Project description:Microorganisms in sediments and on microplastic surface (with lindane) Raw sequence reads

| PRJNA1055573 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data