Project description:Whole genome sequencing (WGS) of tongue cancer samples and cell line was performed to identify the fusion gene translocation breakpoint. WGS raw data was aligned to human reference genome (GRCh38.p12) using BWA-MEM (v0.7.17). The BAM files generated were further analysed using SvABA (v1.1.3) tool to identify translocation breakpoints. The translocation breakpoints were annotated using custom scripts, using the reference GENCODE GTF (v30). The fusion breakpoints identified in the SvABA analysis were additionally confirmed using MANTA tool (v1.6.0).

2024-02-17 | E-MTAB-12534 | biostudies-arrayexpress

Nodularia nipponensis

Project description:Complete mitochondrial sequence of Nodularia nipponensis

| PRJDB11042 | ENA

Chrysoperla nipponensis

Project description:Chrysoperla nipponensis Transcriptome or Gene expression

| PRJNA267467 | ENA

Gammarus nipponensis

Project description:Gammarus nipponensis mitochondrial genome sequencing and assembly

| PRJNA999456 | ENA