Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Soil amplicon sequencing data

ABSTRACT: Soil amplicon sequencing data Raw sequence reads

PROVIDER: PRJNA1000215 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR25468700_1.fastq.gz	Fastqsanger.gz
	SRR25468700_2.fastq.gz	Fastqsanger.gz
	SRR25468800_1.fastq.gz	Fastqsanger.gz
	SRR25468800_2.fastq.gz	Fastqsanger.gz
	SRR25468900_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 768

Similar Datasets

16S amplicon sequencing data

Project description:16S amplicon sequencing data Raw sequence reads

| PRJNA822694 | ENA

soil amplicon

Project description:soil amplicon Raw sequence reads

| PRJNA955455 | ENA

soil amplicon

Project description:soil amplicon Raw sequence reads

| PRJNA955316 | ENA

Soil amplicon and metagenomic raw data

Project description:Soil amplicon and metagenomic raw data

| PRJNA1197353 | ENA

Amplicon sequencing data from Siberian permafrost

Project description:Amplicon sequencing data from Siberian permafrost Raw sequence reads

| PRJNA634390 | ENA

Amplicon sequencing

Project description:Amplicon sequencing Raw sequence reads

| PRJNA1230830 | ENA

Soil metagenome from avocado orchards in Channybearup, Western Australia in 2024

Project description:Metagenome data from soil samples were collected at 0 to 10cm deep from 2 avocado orchards in Channybearup, Western Australia, in 2024. Amplicon sequence variant (ASV) tables were constructed based on the DADA2 pipeline with default parameters.

2025-06-15 | GSE298403 | GEO

High-throughput 16S rRNA amplicon pyrosequencing of contaminated aquifer sediment

Project description:Contaminated aquifer (Dusseldorf-Flinger, Germany) templates extracted from 5 sediment depths ranging between 6.4 and 8.4 m below ground and over 3 years of sampling were amplified for amplicon pyrosequencing using the primers Ba27f (5’-aga gtt tga tcm tgg ctc ag-3’) and Ba519r (5’- tat tac cgc ggc kgc tg-3’), extended as amplicon fusion primers with respective primer A or B adapters, key sequence and multiplex identifiers (MID) as recommended by 454/Roche. Amplicons were purified and pooled as specified by the manufacturer. Emulsion PCR (emPCR), purification of DNA-enriched beads and sequencing run were performed following protocols and using a 2nd generation pyrosequencer (454 GS FLX Titanium, Roche) as recommended by the developer. Quality filtering of the pyrosequencing reads was performed using the automatic amplicon pipeline of the GS Run Processor (Roche), with a slight modification concerning the valley filter (vfScanAllFlows false instead of TiOnly) to extract the sequences. Demultiplexed raw reads were furhter trimmed for quality and lenght (>250 bp).

2012-11-11 | GSE25345 | GEO

RSD soil sequencing data

Project description:RSD soil sequencing data Raw sequence reads

| PRJNA890763 | ENA

16S rRNA amplicon sequencing of soil samples

Project description:16S rRNA amplicon sequencing of soil samples Raw sequence reads

| PRJNA1299305 | ENA