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DNA methylation analysis of Conyza canadensis.L in the native and non-native range.

ABSTRACT: DNA methylation analysis of Conyza canadensis.L in the native and non-native range.

PROVIDER: PRJNA1001974 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR25511088_1.fastq.gz	Fastqsanger.gz
	SRR25511088_2.fastq.gz	Fastqsanger.gz
	SRR25511089_1.fastq.gz	Fastqsanger.gz
	SRR25511089_2.fastq.gz	Fastqsanger.gz
	SRR25511090_1.fastq.gz	Fastqsanger.gz

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DNA methylation analysis of Conyza canadensis.L in the native and non-native range.

Project description:To understand widespread differences in the DNA methylation patterns of Conyza canadensis leaf samples from its native and non-native ranges. Using Whole Genome Bisulfite Sequencing, we found average read coverages in high mapped reads across native and non-native samples of Conyza canadensis. Using R bioconductor package, we found enrichment score of methylated sites in both native and non-native samples. while analyzing CG, CHG and CHH methylation, we found relatively low CG and CHG methylation across transcriptional units in natives over non-natives. However, differentially methylated regions were found to be 53% hypomethylated and 41% hypermethylated in non-natives on genic regions.

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