Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Transcriptome sequencing of tetraploid Elsholtzia splendens leaf after cold stress

PROVIDER: PRJNA1001985 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR25508600_1.fastq.gz	Fastqsanger.gz
	SRR25508600_2.fastq.gz	Fastqsanger.gz
	SRR25508601_1.fastq.gz	Fastqsanger.gz
	SRR25508601_2.fastq.gz	Fastqsanger.gz
	SRR25508593_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

Project description:Transcriptome sequencing of Elsholtzia splendens diploid and colchicine-induced tetraploid plants

| PRJNA993858 | ENA

Project description:Elsholtzia splendens genome sequencing

| PRJNA1244401 | ENA

Elsholtzia splendens

Project description:Elsholtzia splendens overview

| PRJNA1244514 | ENA

Project description:Shoots of Elsholtzia splendens sequencing

| PRJNA557274 | ENA

Project description:Full-length transcriptome of Elsholtzia splendens

| PRJNA1001616 | ENA

Elsholtzia splendens

Project description:Elsholtzia splendens haplotype 2 genome sequencing

| PRJNA1244032 | ENA

Elsholtzia splendens

Project description:Elsholtzia splendens haplotype 1 genome sequencing

| PRJNA1244033 | ENA

Project description:Genome sequencing project of Elsholtzia splendens

| PRJNA1183878 | ENA

Identification of microRNAs and their target genes in Moringa oleifera leaf and callus

Project description:This study aims to identify the differential expression of conserved and novel miRNAs and their target genes in M. oleifera leaf, callus and cold stress treated callus by high-throughput small RNA sequencing.

2018-08-31 | GSE119247 | GEO

Global crotonylatome and function analysis of lysine-crotonylated proteins in wheat response to cold stress

Project description:Abstract Lysine crotonylation (Kcr) is a recently identified post-translational modification (PTM) in the prokaryotic and eukaryotic organisms. However, the function of lysine-crotonylated proteins in response to abiotic stress in plants remains largely unknown. Here, we report the first global profiling of the Kcr proteome in common wheat, identifying 4,696 Kcr sites on 1,726 substrate proteins, participating in a wide variety of biological and metabolic pathways. Combination of transcriptome and proteome in a RIL (recombinant inbred line) population, Kcr proteome, and genome-wide association study, a candidate gene phosphoglycerate kinase (TaPGK) was identified to potentially affect on cold tolerance in common wheat. Using EMS-mutants, overexpressed transgenic wheat plants and CRISPR/Cas9-mediated know-out mutants, we demonstrated that TaPGK played a positively key role in regulation of plant cold tolerance. Moreover, TaPGK protein strongly interacted with sirtuin-like (TaSRT1). EMS-mutant tetraploid and overexpressed transgenic wheat experiments confirmed that TaSRT1 gene negatively regulated wheat cold tolerance. Immunoprecipitation demonstrated that TaSRT1 promoted the degradation of TaPGK by erasing Kcr. Additionally, RNA-sequencing results showed that overexpressed TaPGK significantly improved expression of peroxidase genes. It concluded that a large number of Kcr sites were present in wheat important proteins and TaPGK crotonylated by TaSRT1 played a key role in wheat response to cold stress through scavenging the accumulation of ROS.

2023-07-20 | PXD030768 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data