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Derepressing nuclear pyruvate dehydrogenase induces therapeutic cancer cell reprogramming (ATAC-seq)

ABSTRACT: Derepressing nuclear pyruvate dehydrogenase induces therapeutic cancer cell reprogramming (ATAC-seq)

PROVIDER: PRJNA1003428 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR25569848.fastq.gz	Fastqsanger.gz
	SRR25569849.fastq.gz	Fastqsanger.gz
	SRR25569850.fastq.gz	Fastqsanger.gz
	SRR25569851.fastq.gz	Fastqsanger.gz
	SRR25569852.fastq.gz	Fastqsanger.gz

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Derepressing nuclear pyruvate dehydrogenase induces therapeutic cancer cell reprogramming

Project description:Metabolites are essential substrates for epigenetic modifications. Although nuclear acetyl-CoA constitutes a small fraction of the whole cell pool, it regulates cell fate by locally providing histone acetylation substrate. Here, we report a nucleus-specific acetyl-CoA regulatory mechanism that can be modulated to achieve therapeutic cancer cell reprogramming. Combining phenotypic chemical screen, genome-wide CRISPR screen, and proteomics, we identified that the nucleus-localized pyruvate dehydrogenase complex (nPDC) is constitutively inhibited by the nuclear protein ELMSAN1 through direct interaction. Pharmacologic inhibition of the ELMSAN1-nPDC interaction derepressed nPDC activity, enhancing nuclear acetyl-CoA generation and reprograming cancer cells to a postmitotic state with diminished cell-of-origin signatures. Reprogramming was synergistically enhanced by histone deacetylase 1/2 inhibition, resulting in inhibited tumor growth, durably suppressed tumor-initiating ability, and improved survival in multiple cancer types in vivo, including therapy-resistant sarcoma patient-derived xenografts and carcinoma cell line xenografts. Our findings highlight the potential of targeting ELMSAN1-nPDC as epigenetic cancer therapy.

2025-05-08 | GSE240355 | GEO