Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Rhizosphere microbial community of tomato (Fungi)

ABSTRACT: Rhizosphere microbial community of tomato Raw sequence reads (Fungi)

PROVIDER: PRJNA1004057 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR25593645.fastq.gz	Fastqsanger.gz
	SRR25593646.fastq.gz	Fastqsanger.gz
	SRR25593647.fastq.gz	Fastqsanger.gz
	SRR25593648.fastq.gz	Fastqsanger.gz
	SRR25593649.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 15

Similar Datasets

Comprehensive effects of GmVP2-overexpression on plant growth, P-remobilization and rhizosphere microbial community

Project description:Increased root H+ secretion is known as a strategy of plant adaption to low phosphorus (P) stress by enhancing mobilization of sparingly soluble P-sources. However, it remains fragmentarywhether enhanced H+ exudation could reconstruct the plant rhizosphere microbial community under low P stress. The present study found that P deficiency led to enhanced H+ exudation from soybean (Glycine max) roots. Three out of all eleven soybean H+-pyrophosphatases (GmVP) geneswere up-regulated by Pi starvation in soybean roots. Among them, GmVP2 showed the highest expression level under low P conditions. Transient expression of a GmVP2-green fluorescent protein chimera in tobacco (Nicotiana tabacum) leaves, and functional characterization of GmVP2 in transgenic soybean hairy roots demonstrated that GmVP2 encoded a plasma membrane transporter that mediated H+ exudation. Meanwhile, GmVP2-overexpression in Arabidopsis thaliana resulted in enhanced root H+ exudation, promoted plant growth, and improved sparingly soluble Ca-P utilization. Overexpression of GmVP2 also changed the rhizospheric microbial community structures, as reflected by a preferential accumulation of acidobacteria in the rhizosphere soils. These results suggested that GmVP2 mediated Pi-starvation responsive H+ exudation,which is not only involved in plant growth and mobilization of sparingly soluble P-sources, but also affects microbial community structures in soils.

2023-06-01 | GSE205273 | GEO

GeoChip data of soil microbial communities in the maize rhizosphere and bulk soils

2014-09-12 | GSE61338 | GEO

Arbuscular mycorrhizal fungi-mediated differential composition and metabolism of rhizosphere microbial community

Project description:Arbuscular mycorrhizal fungi-mediated differential composition and metabolism of rhizosphere microbial community. Using Syncoms containg Rhizophagus intraradices, Nigrospora oryzae and Talaromyces verruculosus.

2024-07-29 | MTBLS7299 | MetaboLights

Rhizosphere microbial community of tomato (Bacteria)

Project description:Rhizosphere microbial community of tomato (Bacteria) Raw sequence reads

| PRJNA1004066 | ENA

GeoChip data of soil microbial communities in the maize rhizosphere and bulk soils

Project description:Microbial communities in the rhizosphere make significant contributions to crop health and nutrient cycling. However, their ability to perform important biogeochemical processes remains uncharacterized. Important functional genes, which characterize the rhizosphere microbial community, were identified to understand metabolic capabilities in the maize rhizosphere using GeoChip 3.0-based functional gene array method. Triplicate samples were taken for both rhizosphere and bulk soil, in which each individual sample was a pool of four plants or soil cores. To determine the abundance of functional genes in the rhizosphere and bulk soils, GeoChip 3.0 was used.

2014-09-12 | E-GEOD-61338 | biostudies-arrayexpress

GeoChip data of soil microbial communities in the maize rhizosphere and bulk soils

2014-12-10 | E-MTAB-2920 | biostudies-arrayexpress

Rhizosphere Microbial Community

Project description:MTT Rhizosphere Microbial Community Raw sequence reads

| PRJNA745256 | ENA

peanut rhizosphere microbial community

Project description:peanut rhizosphere microbial community Genome sequencing

| PRJNA592826 | ENA

peanut rhizosphere microbial community

Project description:peanut rhizosphere microbial community Genome sequencing

| PRJNA575117 | ENA