Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Comparison of the microbiome and mycobiome in tissues of the tropical carnivorous epiphytic herb Utricularia jamesoniana

PROVIDER: PRJNA1005337 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR25635815_1.fastq.gz	Fastqsanger.gz
	SRR25635815_2.fastq.gz	Fastqsanger.gz
	SRR25635816_1.fastq.gz	Fastqsanger.gz
	SRR25635816_2.fastq.gz	Fastqsanger.gz
	SRR25635817_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Exploring the female genital tract mycobiome in young South African women using metaproteomics

Project description:Female genital tract (FGT) diseases such as bacterial vaginosis (BV) and sexually transmitted infections are prevalent in South Africa, with young women being at an increased risk. Since imbalances in the FGT microbiome are associated with FGT diseases, it is vital to investigate the factors that influence FGT health. The mycobiome plays an important role in regulating mucosal health, especially when the bacterial component is disturbed. However, we have a limited understanding of the FGT mycobiome since many studies have focused on bacterial communities and have neglected low abundance taxonomic groups, such as fungi. To reduce this knowledge deficit, we present the first large-scale metaproteomic study to define the taxonomic composition and potential functional processes of the FGT mycobiome in South African reproductive-age women. We examined FGT fungal communities present in 123 women by collecting lateral vaginal wall swabs for liquid chromatography-tandem mass spectrometry.

2025-03-28 | PXD046053 | Pride

Project description:Comparative Transcriptome Analysis Reveals Molecular Evolution in the Carnivorous Utricularia

| PRJNA354080 | ENA

Project description:Cross-phytogroup assessment of foliar epiphytic mycobiome

| PRJNA688004 | ENA

Diet rapidly and reproducibly alters the human gut microbiome

Project description:Long-term dietary intake influences the structure and activity of the trillions of microorganisms residing in the human gut, but it remains unclear how rapidly and reproducibly the human gut microbiome responds to short-term macronutrient change. Here we show that the short-term consumption of diets composed entirely of animal or plant products alters microbial community structure and overwhelms inter-individual differences in microbial gene expression. The animal-based diet increased the abundance of bile-tolerant microorganisms (Alistipes, Bilophila and Bacteroides) and decreased the levels of Firmicutes that metabolize dietary plant polysaccharides (Roseburia, Eubacterium rectale and Ruminococcus bromii). Microbial activity mirrored differences between herbivorous and carnivorous mammals, reflecting trade-offs between carbohydrate and protein fermentation. Foodborne microbes from both diets transiently colonized the gut, including bacteria, fungi and even viruses. Finally, increases in the abundance and activity of Bilophila wadsworthia on the animal-based diet support a link between dietary fat, bile acids and the outgrowth of microorganisms capable of triggering inflammatory bowel disease. In concert, these results demonstrate that the gut microbiome can rapidly respond to altered diet, potentially facilitating the diversity of human dietary lifestyles. RNA-Seq analysis of the human gut microbiome during consumption of a plant- or animal-based diet.

2013-12-05 | E-GEOD-46761 | biostudies-arrayexpress

Hunters or gardeners

Project description:Hunters or gardeners_Probing plant–microbe interactions in rootless carnivorous Utricularia from a transcriptomic perspective

| PRJEB8057 | ENA

Hunters or gardeners

Project description:Hunters or gardeners Probing plant–microbe interactions in rootless carnivorous Utricularia from a transcriptomic perspective

| PRJEB8041 | ENA

Digestive physiology in the carnivorous rainbow plant Byblis filifolia Planch

Project description:•Carnivorous plants from the order Caryophyllales co-opted plant phytohormones from the group of jasmonates for regulation of digestive enzyme activities. But not all genera of carnivorous plants are evenly explored and the digestive physiology of the Australian carnivorous rainbow plants of the genus Byblis (order: Lamiales) is only very poorly understood. •Here, we investigated the composition of digestive enzymes in the secreted fluid of Byblis filifolia using LC/MS, measured enzyme activities and analysed the phytohormone tissue level after experimental feeding on fruit flies and coronatine application. •Several hydrolytic digestive enzymes were identified in the secreted digestive fluid which were clearly upregulated in the presence of insect prey. But in contrast to sundew plant Drosera capensis, endogenous jasmonate did not accumulate and coronatine, a molecular mimic of jasmonates, was not able to trigger enzyme secretion. •Our results document that carnivorous plant B. filifolia is fully carnivorous with their own digestive enzyme repertoire. However in contrast to carnivorous genera from the order Caryophyllales, they are not under the control of jasmonates. This indicates that jasmonates have not been co-opted for regulation of digestive enzyme activity repeatedly during evolution of carnivorous plants.

2025-05-20 | PXD060459 | Pride

Blue light perception by epiphytic Pseudomonas syringae drives chemoreceptor expression enabling efficient plant infection

Project description:Blue light perception by epiphytic Pseudomonas syringae drives chemoreceptor expression enabling efficient plant infection

2020-10-31 | GSE152188 | GEO

bacterial and fungal communities

Project description:respiratory mycobiome and microbiome

| PRJNA433463 | ENA

Project description:Grapevine epiphytic microbiome (leaves,fruits)

| PRJNA834626 | ENA