Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Aeromonas veronii sequencing

PROVIDER: PRJNA1010177 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR25777287_subreads.fastq.gz	Fastqsanger.gz
	SRR25777288_subreads.fastq.gz	Fastqsanger.gz
	SRR25777289_subreads.fastq.gz	Fastqsanger.gz
	SRR25790695_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Identifying the target genes of the arginine transcription factor ArgR

Project description:To elucidate the target genes of ArgR in Aeromonas veronii, we engineered an Aeromonas veronii strain that expresses the ArgR protein fused to a 3× FLAG tag, and FLAG antibodies were employed for the immunoprecipitation of DNA-protein complexes.

2024-09-15 | GSE277129 | GEO

Emerging Aeromonas enteric infections: their association with inflammatory bowel disease and novel pathogenic mechanisms

Project description:The intestinal epithelial gene responses to Aeromonas veronii infection and the pathogenic mechanisms were investigated by comparative differential expression analysis

2023-07-28 | GSE222117 | GEO

Human macrophage response to the emerging enteric pathogen Aeromonas veronii: inflammation, apoptosis, and downregulation of histones

Project description:The macrophage cell (THP-1 derived macrophages) gene responses to Aeromonas veronii and Escherichia coli were investigated by comparative differential expression analysis

2024-12-05 | GSE273835 | GEO

Single-cell transcriptome analysis reveals a cellular immune response in freshwater dark sleeper (Odontobutis potamophila) after infection with Aeromonas veronii

Project description:The bacterium Aeromonas veronii is a co-pathogenic species that can negatively impact the health of both humans and aquatic animals. In this study, we used single-cell transcriptome analysis (scRNA-seq) to investigate the effects of infection with A. veronii on head kidney cells and the regulation of gene expression in the dark sleeper (Odontobutis potamophila). scRNA-seq was used to assess the effects of infection with A. veronii in O. potamophila B cells, endothelial cells, macrophages, and granulocytes, and differential enrichment analysis of gene expression in B cells and granulocytes was performed. The analyses revealed a significant increase in neutrophils and decrease in eosinophils in granulocytes infected with A. veronii. Activation of neutrophils enhanced ribosome biogenesis by up-regulating the expression of rps12 and rpl12 to fight against invading pathogens. Crucial pro-inflammatory mediators il1b, ighv1-4, and the major histocompatibility class II genes mhc2a and mhc2dab, which are involved in virulence processes, were up-regulated, suggesting that A. veronii activates an immune response that presents antigens and activates immunoglobulin receptors in B cells. These cellular immune responses triggered by infection with A. veronii enriched the available scRNA-seq data for teleosts, and these results are important for understanding the evolution of cellular immune defense and functional differentiation of head kidney cells.

2023-05-16 | GSE229275 | GEO

Project description:Aeromonas veronii

| PRJNA560312 | ENA

Aeromonas veronii strain:BN1 | isolate:Aeromonas veronii BN1

Project description:Aeromonas veronii strain:BN1 | isolate:Aeromonas veronii BN1 Genome sequencing

| PRJNA414156 | ENA

Aeromonas veronii

Project description:Aeromonas veronii Genome sequencing

| PRJNA1223426 | ENA

Aeromonas veronii

Project description:Aeromonas veronii Genome sequencing

| PRJNA928318 | ENA