Project description:We performed that comprehensive identification of genes responsible for stress tolerance by analyzing the whole-genome expression profiles of poplar (Populus alba × P. glandulosa) leaves exposed to drought and salt stresses. Examination at the molecular level how this tree species responds to drought and salt stresses by regulating the expression of genes involved in signal transduction, transcriptional regulation, and stress responses.
Project description:Transcriptome analysis was performed on the sixth leaves of Populus alba × P. glandulosa. The twelve samples were: four PagSUPa overexpression (OE) line 2 samples 2-1-L6, 2-2-L6, 2-3-L6 and 2-4-L6, four PagSUPa OE line 7 samples 7-1-L6, 7-2-L6, 7-3-L6 and 7-4-L6, four nontransgenic control (CK) samples CK-1-L6, CK-2-L6, CK-3-L6, CK-4-L6 . And the differential genes between PagSUPa OE and CK groups were identified and compared, which helps to reveal the molecular mechanism of PagSUPa directly suppresses the expression of phragmoplast orienting and positioning genes PagPOK1 and PagPOK2, and impairs cytokinesis and cell wall organization.
Project description:To obtain genes expression in different parts of 84k poplar stems, transcriptome sequencing was performed using Illumina Novaseq 6000 second-generation sequencing platform from Shanghai BIOZERON Co. Ltd (www.biozeron.com). Selecte three stem segments of plants REPEAT 1, 2 and 3 with good and similar growth to use: 2nd-3rd internodes (poplar stem top: PST1, PST2, PST3); 9th-10th internodes (poplar stem middle: PSM1, PSM2, PSM3); 14th-15th internodes (poplar stem bottom: PSB1, PSB2, PSB3). [Or the three repeating organisms are also called poplar A, B, C. From top to bottom, the three parts of the stem are also called stem 1, 2, 3.]
