Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Glycine max

ABSTRACT: soybean raw sequence reads

PROVIDER: PRJNA1022838 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR26247365_1.fastq.gz	Fastqsanger.gz
	SRR26247365_2.fastq.gz	Fastqsanger.gz
	SRR26247366_1.fastq.gz	Fastqsanger.gz
	SRR26247366_2.fastq.gz	Fastqsanger.gz
	SRR26247367_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Glycine max

Project description:Soybean (Glycine max) had infected soybean cyst nematode raw sequence reads

| PRJNA306741 | ENA

Glycine max

Project description:Soybean transcriptome raw sequence reads of soybean seeds for under aging stress

| PRJNA1112530 | ENA

Comparative genomic hybridization analysis in glycine max fast neutron mutants

Project description:Soybean fast neutron mutant lines were maintained to an advanced generation (ranging between approximately M6 and M11) and compared to their wild-type parent (M92-220-Long) using CGH to identify sequence deletions and duplications in the mutant plants.

2018-08-16 | GSE118590 | GEO

Glycine max and Vigna unguiculata

Project description:Soybean and Cowpea Raw sequence reads

| PRJNA732533 | ENA

Glycine max cultivar:Liaodou15

Project description:Soybean (Glycine max) had infected soybean cyst nematode raw sequence reads

| PRJNA401255 | ENA

Glycine max

Project description:Glycine max (soybean) and its fungal pathogen Sclerotinia sclerotiorum Raw sequence reads

| PRJNA789389 | ENA

Soybean (Glycine max)

Project description:Soybean infected with Bean pod mottle virus Raw sequence reads

| PRJNA350171 | ENA

Identifying conserved and novel miRNAs in germinating seeds of Glycine max using deep sequencing

Project description:MicroRNAs (miRNAs) are important post-transcriptional regulators of plant development. In soybean (Glycine max), an important edible oil crop, valuable lipids are synthesized and stored in the cotyledons during embryogenesis .This storage lipids are used as energy source of the emerging seeds, during the germination procces. Until now, there are no microRNAs related to lipid metabolism in soybean or any other plant. This work aims to describe the miRNAome of germinating seeds of B. napus by identifying plant-conserved and novel miRNAs and comparing miRNA abundance in mature versus germinating seeds. A total of 183 familes were detected through a computational analysis of a large number of reads obtained from deep sequencing from two small RNA libraries of (i) pooled germintaing seeds stages and (ii) mature soybean seeds. We have found 39 new mirna precursors which produce 41 new mature forms. The present work also have identified isomiRNAs and mirnas offset (moRNAs). This work presents a comprehensive study of the miRNA transcriptome of soybean germinating seeds and will provide a basis for future research on more targeted studies of individual miRNAs and their functions in lipid consumption in development soybean seeds.

2015-05-25 | GSE38373 | GEO

Glycine max Transcriptome or Gene expression

Project description:Tropospheric ozone (O3) is a secondary air pollutant and anthropogenic greenhouse gas. Concentrations of tropospheric O3 have more than doubled since the Industrial Revolution, and are high enough to damage plant productivity. Soybean (Glycine max L. Merr.) is the worldâs most important legume crop and is sensitive to O3. Current ground-level O3 are estimated to reduce global soybean yields by 6% to 16%. In order to understand transcriptional mechanisms of yield loss in soybean, we examined the transcriptome of soybean flower and pod tissues exposed to elevated O3 using RNA-Sequencing.

2015-01-31 | E-MTAB-5226 | biostudies-arrayexpress

Characterization of RNAs in soybean (Glycine max)

Project description:RNA-seq was used to characterize gene expression in soybean from a wide range of tissues. The primary focus of the project was small RNAs, and the identification of microRNAs and phased siRNA-generating loci, but RNA-seq data were generated from the same samples. This project was supported by the United Soybean Board.

2020-05-09 | GSE150157 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data