Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sclerotinia sativa strain:CBS 339.47

ABSTRACT: Sclerotinia sativa strain:CBS 339.47 Genome sequencing

PROVIDER: PRJNA1023623 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Sclerotinia sulcata strain:CBS 303.31

Project description:Sclerotinia sulcata strain:CBS 303.31 Genome sequencing

| PRJNA1023625 | ENA

Sclerotinia spermophila strain:CBS 219.46

Project description:Sclerotinia spermophila strain:CBS 219.46 Genome sequencing and assembly

| PRJNA1017982 | ENA

Profiling the Cannabis-Sclerotinia pathosystem at the mRNA level using dual RNA sequencing

Project description:Known to infect more than 600 plant species worldwide, Sclerotinia sclerotiorum is a necrotrophic fungal pathogen, and the causative agent of white mold. With recent infection reports documented across North America, Cannabis sativa is known to be susceptible to Sclerotinia infection. Resulting from legal constraints associated with C. sativa, little is known about the Cannabis-Sclerotinia pathosystem, particularly in how the plant responds to pathogen attack at the cellular and molecular levels. Anatomical study revealed initial infection and degradation of the epidermis and cortical parenchyma, followed by widespread infection of the vascular phloem. Dual RNA sequencing provided a detailed transcriptomic profile of this pathosystem directly at the site of infection. Differential gene expression analysis revealed large-scale transcriptional shifts resulting from rapid infection. We identified the upregulation of 97 genes at 1 day post inoculation (dpi) and 6733 genes 5 dpi in C. sativa, while 3186 genes were identified in S. sclerotiorum 7 dpi. Gene ontology term enrichment identified processes associated with plant defense and signal transduction cascades during C. sativa infection while processes associated with redox control and sugar catabolism were enriched in S. sclerotiorum. Taken together, this study revealed transcriptional reprogramming in both the host plant and fungal pathogen associated with degradation of host cortical and vascular phloem tissues.

2025-03-01 | GSE284432 | GEO

Expression analysis of Pichia stipitis CBS 6054 grown in glucose or xylose

Project description:Investigation of whole genome gene expression level changes in Pichia stipitis CBS 6054 grown aerobically in xylose, compared to the same strain grown aerobically in glucose.

2011-10-20 | GSE24854 | GEO

Sclerotinia sclerotiorum strain:PB4

Project description:Sclerotinia sclerotiorum strain:PB4 Genome sequencing

| PRJNA860329 | ENA

Transcriptome data on gene expression in Drosophila strains with deletions of sulfur metabolism genes: CBS and CSE

Project description:To reveal the role of sulfur metabolism genes in memory formation processes, transcriptome libraries were obtained from the heads of 5-day-old naive males. The libraries were generated from Drosophila strains created in our laboratory with deleted cbs genes ( CBS-/-(5) and CBS-/-(8), cse (CSE-/-) and strains with double deletion of cbs and cse genes (CBS-/-,CSE-/-(1) and (CBS-/-,CSE-/-(2). Strain 58492, in which deletions were introduced by the CRISP/CAS9 method, was used as a control strain.

2022-04-14 | GSE200397 | GEO

Expression analysis of Pichia stipitis CBS 6054 grown in glucose or xylose

Project description:Investigation of whole genome gene expression level changes in Pichia stipitis CBS 6054 grown aerobically in xylose, compared to the same strain grown aerobically in glucose. A six array study using total RNA recovered from three separate cultures of Pichia stipitis CBS 6054 grown in glucose and three separate cultures of Pichia stipitis CBS 6054 grown in xylose. Each array measures the expression level of 374,100 probes (average probe length 53.6 +/- 4.1 nt) tiled across the Pichia stipitis CBS 6054 genome with a median spacing distance of 33 nt. During data processing, probes are filtered to include only those probes corresponding to annotated protein-coding genes.

2011-10-19 | E-GEOD-24854 | biostudies-arrayexpress

Sclerotinia

Project description:Sclerotinia sclerotiorum (P7), Sclerotinia minor (SM1) and Sclerotinia subarctica (HE1) genome sequencing and assembly Necrotrophic plant fungal pathogens

| PRJNA482943 | ENA

Sclerotinia sclerotiorum strain:PPRI 4301 | isolate:Sclerotinia sclerotiorum

Project description:Sclerotinia sclerotiorum strain:PPRI 4301 | isolate:Sclerotinia sclerotiorum Raw sequence reads

| PRJNA562112 | ENA

Sclerotinia trifoliorum strain:06CWM-G22

Project description:Sclerotinia trifoliorum strain:06CWM-G22 Genome sequencing and assembly

| PRJNA342711 | ENA