Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Escherichia coli K-12 strain:k12

ABSTRACT: HiC +/- repliction

PROVIDER: PRJNA1024671 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR26323768_1.fastq.gz	Fastqsanger.gz
	SRR26323768_2.fastq.gz	Fastqsanger.gz
	SRR26346298_1.fastq.gz	Fastqsanger.gz
	SRR26346298_2.fastq.gz	Fastqsanger.gz
	SRR26346299_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Escherichia coli K-12 strain:k12

Project description:HiC transposed Ter strain

| PRJNA1021387 | ENA

Transcriptional profile of Escherichia coli K12 strain JM109 harboring pUCA1501

Project description:A1501 aroA is a gene derived from Pseudomonas stutzeri A1501, encoding a class II glyphosate-tolerant EPSP synthase. To understand the effect of class II EPSP synthase to E. coli under glyphosate shock, we constructed the class II EPSP synthase-expressing plasmid pUC-A1501. And pUC18 is the empty vector used as a control.

2013-10-15 | GSE46625 | GEO

Transcriptional profile of Escherichia coli K12 strain JM109 under 200 mM glyphosate shock

Project description:Glyphosate (GLY) is an effective antimetabolite that acts against the shikimate pathway 5-enolpyruvylshikimate 3-phosphate (EPSP) synthase, However, little is known about the genome-scale transcriptional responses of bacteria after glyphosate shock. To investigate further the mechanisms by which E. coli response to a glyphosate shock, a DNA-based microarray was used for transcriptional analysis of E. coli exposed to 200 mM glyphosate.

2011-07-22 | GSE30838 | GEO

Molecular cloning and characterization of Escherichia coli K12 ygjG gene.

Project description:BACKGROUND:Putrescine is the intermediate product of arginine decarboxylase pathway in Escherichia coli which can be used as an alternative nitrogen source. Transaminase and dehydrogenase enzymes seem to be implicated in the degradative pathway of putrescine, in which this compound is converted into gamma-aminobutyrate. But genes coding for these enzymes have not been identified so far. RESULTS:The 1.8-kbp DNA fragment containing E. coli K12 ygjG gene with aer-ygjG intergenic region was examined. It was found that the fragment contains sigma54-depended open reading frame (ORF) of 1,380 nucleotides encoding a 459-amino acid polypeptide of approximately 49.6 kDa. The cytidine (C) residue localized 10 bp downstream of the sigma54 promoter sequence was identified as the first mRNA base. The UUG translation initiation codon is situated 36 nucleotides downstream of the mRNA start. The YgjG was expressed as a his6-tag fused protein and purified to homogeneity. The protein catalyzed putrescine:2-oxoglutaric acid (2-OG) aminotransferase reaction (PATase, EC 2.6.1.29). The Km values for putrescine and 2-OG were found to be 9.2 mM and 19.0 mM, respectively. The recombinant enzyme also was able to transaminate cadaverine and, in lower extent, spermidine, and gave maximum activity at pH 9.0. CONCLUSION:Expression of E. coli K12 ygjG coding region revealed sigma54-depended ORF which encodes a 459-amino acid protein with putrescine:2-OG aminotransferase activity. The enzyme also was able to transaminate cadaverine and, in lower extent, spermidine.

| S-EPMC150594 | biostudies-literature

Closed Genome Sequence of Escherichia coli K-12 Group Strain C600.

Project description:Escherichia coli strain C600 is a prototypical K-12 derived laboratory strain which has been broadly used for molecular microbiology and bacterial physiology studies since its isolation in 1954. Here, we present the closed genome sequence of E. coli strain C600, retrieved from the American Type Culture Collection (ATCC 23724).

| S-EPMC6328645 | biostudies-literature

Transcriptional responses of Escherichia coli k12 TPEN

Project description:DNA microarrays were conducted on E. coli K12 cells stressed with 10 μM in N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine (TPEN). Overall, 260 genes varied in expression, 114 up-regulated and 146 down-regulated by Zn deprivation Keywords: TPEN stress

2008-12-31 | GSE11303 | GEO

Escherichia coli K-12 strain:K12

Project description:Decoding the Escherichia coli epitranscriptome with 004kit

| PRJNA1198641 | ENA

Escherichia coli K-12 strain:K12

Project description:Genome re-seqeuncing of Escherichia coli K12

| PRJNA339654 | ENA

Escherichia coli K-12 strain:K12

Project description:Acceleration of resistance adaptation depends on the strength of selection imposed by previous drug exposures

| PRJNA769657 | ENA

Escherichia coli K-12 strain:K12

Project description:Escherichia coli K-12 strain:K12 Transcriptome or Gene expression