Project description:A testing association of parasite genotypes with clinical resistance phenotype. Submission of genotypes from all microarray genotyped samples
Project description:A genome wide association study (GWAS) testing association of parasite genotypes with clinically decreased piperaquine sensitivity phenotype Submission of genotypes from all microarray genotyped samples
Project description:This project includes 6 experimental groups (Group A-G) of exosomes derived from the human acute myeloid leukemia cell line KG-1a, KG-1, Kasumi-1, THP-1, U937, and HEL cells, resulting in a total of 6 Thermo RAW mass spectrometry files. LC-MS analysis was then used to identify and characterize proteins carried by leukemia cell-derived exosomes. **File Description** The uploaded "SEARCH.zip" file contains all corresponding protein, peptide, and PSM identification results for this proteomics project. All .raw files have been successfully associated with this "SEARCH.zip" file in the backend. The "null" display in the "Related File" column is a known frontend bug of the iProX platform and does not affect the validity of the data submission.
Project description:Dependent peptide searching is a method for detecting modified peptides using data from shotgun proteomics analyses. We have developed a set of tools for visualising the results of dependent-peptide searches (as performed in MaxQuant). The tools were developed using four sets of search results: two sets for a sample of N-ethylmaleimide-treated bovine serum albumin (BSA), and two sets for a corresponding control sample (replicates = different LC-MS/MS analyses). This submission includes our raw data, MaxQuant output files, and a *.fasta file containing the sequence of mature BSA. An accompanying *.csv file summarises the structure of the data set.
Project description:Definition of genome wide binding profile of Olig2, Ascl1, Tcf3, Max, NFI, Sox2, Sox9 and Sox21 in mouse neural stem cells. Three sets of processed data files, together with a README file (README_E-MTAB-2228.docx) describing the source and content of each file, are provided as additional files to this ArrayExpress submission and can be found in https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-2228 .
