Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Bacterial diversity and functionality in peatlands

PROVIDER: PRJNA1029760 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR26442615_1.fastq.gz	Fastqsanger.gz
	SRR26442615_2.fastq.gz	Fastqsanger.gz
	SRR26442616_1.fastq.gz	Fastqsanger.gz
	SRR26442616_2.fastq.gz	Fastqsanger.gz
	SRR26442617_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 110

Similar Datasets

Microorganisms with Novel Dissimilatory (Bi)Sulfite Reductase Genes are Widespread and Core Microbiota in Low-Sulfate Peatlands

Project description:Peatlands of the Lehstenbach catchment (Germany) house so far unidentified microorganisms with phylogenetically novel variants of the dissimilatory (bi)sulfite reductase genes dsrAB. These genes are characteristic for microorganisms that reduce sulfate, sulfite, or some organosulfonates for energy conservation, but can also be present in anaerobic syntrophs. However, nothing is currently known regarding the abundance, community dynamics, and biogeography of these dsrAB-carrying microorganisms in peatlands. To tackle these issues, soils from a Lehstenbach catchment site (Schlöppnerbrunnen II fen) from different depths were sampled at three time points over a six-year period to analyze the diversity and distribution of dsrAB-containing microorganisms by a newly developed functional gene microarray and quantitative PCR assays. Members of novel, uncultivated dsrAB lineages (approximately representing species-level groups) (i) dominated a temporally stable but spatially structured dsrAB community and (ii) represented ‘core’ members (up to 1-1.7% relative abundance) of the autochthonous microbial community in this fen. In addition, denaturing gradient gel electrophoresis (DGGE)- and clone library-based comparison of the dsrAB diversity in soils from a wet meadow, three bogs, and five fens of various geographic locations (distance ~1-400 km), identified one Syntrophobacter-related and nine novel dsrAB lineages to be widespread in low-sulfate peatlands. Signatures of biogeography in dsrB-DGGE data were not correlated with geographic distance but could largely be explained by soil pH and wetland type, implying that distribution of dsrAB-carrying microorganisms in wetlands on the scale of a few hundred kilometers is not limited by dispersal but determined by contemporary environmental conditions. 36 dsrAB clones for chip evaluation, 33 hybridizations of labeled dsrAB RNA from environmental peatsoil samples

2010-11-26 | E-GEOD-24582 | biostudies-arrayexpress

Microorganisms with novel dissimilatory (bi)sulfite reductase genes are widespread and part of the core microbiota in low-sulfate peatlands.

2010-11-26 | GSE24582 | GEO

Project description:Soil Bacterial Community Diversity of Subtropical Moss Peatlands

| PRJNA1003219 | ENA

marine metagenome

Project description:Study on bacterial diversity and functionality in the Adriatic Sea

| PRJNA174271 | ENA

Project description:Fungal diversity in peatlands of China

| PRJNA772024 | ENA

OEX_Jianjun_2309141602

Project description:Bacterial diversity

2025-05-29 | OEX00025163 | NODE

16S rRNA community profiling of the gut of the African Palm weevil

Project description:To explore the bacterial community profile of the gut of the African palm weevil and to identify the abundance and diversity of lignin degradation-associated bacteria in each gut segment.

2025-01-01 | E-MTAB-13719 | biostudies-arrayexpress

Characterization of human CD56+ MAIT cells in peripheral blood

Project description:A CD56+ MAIT cell population shows features of enhanced innate-like functionality and reduced TCR repertoire diversity.

2024-10-02 | GSE247338 | GEO

wastewater metagenome

Project description:Microbial diversity and functionality in wastewater effluent

| PRJNA176347 | ENA

Romuvaara deep biosphere

Project description:Diversity and functionality of archaeal, bacterial and fungal communities in deep Archaean bedrock groundwater

| PRJEB25908 | ENA