Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Bacterial community of tarballs collected from the Alabama Gulf Coast

PROVIDER: PRJNA1034784 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR26636924_subreads.fastq.gz	Fastqsanger.gz
	SRR26636925_subreads.fastq.gz	Fastqsanger.gz
	SRR26636926_subreads.fastq.gz	Fastqsanger.gz
	SRR26636927_subreads.fastq.gz	Fastqsanger.gz
	SRR26636928_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 11

Similar Datasets

microbiome of methane hydrate sediments: Hydrate Ridge

Project description:Gas hydrates, also known as clathrates, are cages of ice-like water crystals encasing gas molecules such as methane (CH4). Despite the global importance of gas hydrates, their microbiomes remain mysterious. Microbial cells are physically associated with hydrates, and the taxonomy of these hydrate-associated microbiomes is distinct from non-hydrate-bearing sites. Global 16S rRNA gene surveys show that members of sub-clade JS-1 of the uncultivated bacterial candidate phylum Atribacteria are the dominant taxa in gas hydrates. The Atribacteria phylogeny is highly diverse, suggesting the potential for wide functional variation and niche specialization. Here, we examined the distribution, phylogeny, and metabolic potential of uncultivated Atribacteria in cold, salty, and high-pressure sediments beneath Hydrate Ridge, off the coast of Oregon, USA, using a combination of 16S rRNA gene amplicon, metagenomic, and metaproteomic analysis. Methods were developed to extract bacterial cellular protein from these sediments, as outlined below. Sample Description Three sediments samples were collected from beneath Hydrate Ridge, off the coast of Oregon, USA. Sediments were cored at ODP site 1244 (44°35.1784´N; 125°7.1902´W; 895 m water depth) on the eastern flank of Hydrate Ridge ~3 km northeast of the southern summit on ODP Leg 204 in 2002 and stored at -80°C at the IODP Gulf Coast Repository. E10H5 sediment is from 68.5 meters below sediment surface interface C1H2 sediment is from 2 meters below sediment surface interface. C3H4 sediment is from 21 meters below sediment surface interface.

2020-01-22 | PXD012479 | Pride

BP oil spill - field - gill

Project description:In this study we characterize the gill transcriptome changes that coincide with the arrival of contaminating oil in field-collected Gulf killifish Fundulus grandis. Gill transcription was contrasted before and after the arrival of oil, and between oil impacted and reference sites. Animals were sampled from field sites at four times. The oil impacted site is Grand Terre Island Louisiana (GT) and the two reference sites are Bay St. Louis Mississippi (BSL) and Bayou La Batre Alabama (BLB). The first timepoint (05/01/2010 to 05/09/2010) was before the arrival of contaminating oil, the second and third timepoints (06/28/2010 to 06/29/2010, and 08/30/2010 to 09/01/2010) were after the arrival of contaminating oil, and the fourth timepoint 08/28/2011) was over a year after the arrival of contaminating oil.

2013-04-18 | E-MTAB-1622 | biostudies-arrayexpress

Role of cervicovaginal microbiota in genital inflammation

Project description:We performed gene expression analysis using the SCRB-Seq method from cervical and peripheral blood antigen presenting cells that were collected from women with different cervicovaginal bacterial community types.

2015-05-19 | GSE68452 | GEO

Transcriptome profiling of the posterior salivary glands of the cuttlefish Sepia officinalis from the Portuguese West coast

Project description:Transcriptomic profiling (RNA-Seq) of the posterior salivary glands of Sepia officinalis L. 1758 (Mollusca: Coleoidea), wild type, collected from the Portuguese West coast (2020).

2025-01-17 | GSE251667 | GEO

Project description:Fine Scale Patterns in Bacterial Communities on a Gulf Coast Beach

| PRJNA1294970 | ENA

beach sand metagenome

Project description:Gulf Coast Beaches Targeted Locus (Loci)

| PRJNA208242 | ENA

marine metagenome

Project description:Gulf Coast Oil Spill Metagenomic Project

| PRJNA53921 | ENA

Project description:The Gulf of Thailand coastline marine bacterial community

| PRJNA1112762 | ENA

Project description:Sand microbiome from the Mississippi Gulf Coast