Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

MiRNAs regulated systemically by nitrogen availability in shoots and roots of Medicago truncatula

ABSTRACT: miRNAs regulated systemically by nitrogen availability in shoots and roots of Medicago truncatula

PROVIDER: PRJNA1037502 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR26779902.fastq.gz	Fastqsanger.gz
	SRR26779903.fastq.gz	Fastqsanger.gz
	SRR26779904.fastq.gz	Fastqsanger.gz
	SRR26779905.fastq.gz	Fastqsanger.gz
	SRR26779906.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 48

Similar Datasets

miRNAs regulated systemically by nitrogen availability in shoots and roots of Medicago truncatula

Project description:Using a dedicated split-root approach, we identified miRNAs regulated systemically by nitrogen availability in both shoots and roots of the Medicago truncatula model legume, depending on the CRA2 pathway, highlighting the phosphate-related miR399.

2024-07-17 | GSE247405 | GEO

Rhizobial and non/mycorrhizal Medicago truncatula roots and shoots transcriptome

Project description:Rhizobial and non/mycorrhizal Medicago truncatula roots and shoots transcriptome

| PRJNA523418 | ENA

Rhizobial and non/mycorrhizal Medicago truncatula roots and shoots transcriptome

Project description:Plant species posses a special set of genes functional only in arbuscular mycorrhizal symbiosis. So, the model plant Medicago truncatula (Jemalong 5) was used for transcriptome comparative analysis while infected with compatible rhizobia Sinorhizobium meliloti (strain 10) and with or without arbuscular mycorrhizal fungus Rhizophagus irregularis (SYM5). Whole shoot and whole root were used for RNA isolation and processed via one of the European certified Affymetrix core labs (http://core.img.cas.cz).

2019-04-21 | GSE126833 | GEO

Expression data from different tissues (shoots and roots) of Medicago truncatula exposed to three different types of biosolids amended soil

Project description:Little progress has been made in studying the toxicity of realistic 'non-pristine' forms of nanoparticles that presents in real soil environment. It is presently unkown whether the transformed nanoparticles in realistic environment exerts an adverse effect to rhizobium-legume symbiosis on molecular level. We used microarray to investigate the toxicogenomic responses of the model legume Medicago truncatula following 30 days exposure to three different types of biosolids (control biosolids (control BS), a mixture of Ag, ZnO and TiO2 manufactured nanomaterials added biosolids (Nano BS) and a corresponding bulk metals added biosolids (Bulk BS) ) amended soil that were aged for 6 months prior to exposure in pot experiment. Our Genechip® Medicago Genome Array is designed specially to monitor gene expression in Medicago truncatula, Medicago sativa, and the symbiotic organism Sinorhizobium meliloti. For our study, RNA were extracted from shoots and roots of Medicago truncatula that exposure to control, Bulk and Nano BS treatments for 30 days, and used for all hybridization on Affymetrix microarray. The objective of our study is to investigate the molecular mechanisms of toxicity of Nano BS in comparison with their counterpart Bulk BS treatment, using a commercial Medicago truncatula microarrays.

2015-07-01 | E-GEOD-64788 | biostudies-arrayexpress

Transcription profiling of tomato shoots and roots from plants systemically infected by TSWV reveals organ-specific transcriptional responses

Project description:Transcription profiling of roots and shoots of tomato plants as a result of systemic infection with the tospovirus Tomato Spotted Wilt Virus (TSWV).

2009-08-04 | E-MTAB-133 | biostudies-arrayexpress

Cold stress and recovery in shoots and roots of Oryza sativa

Project description:Proteomics analyses of roots and shoots of O. sativa plants exposed to cold stress.

2022-02-16 | PXD028712 | Pride

Expression data from Arabidopsis shoots and roots

Project description:Regulation of genes in shoots and roots and Arabidopsis in response to Zn-deficiency in wild-type and hma2 hma4 mutants plants We used microarrays to determine co-regulated genes in the roots of Zn deficient wild-type plants with hma2 hma4 plants from control conditions. These co-regulated genes are candidates for regulation by a systemic signal

2018-05-01 | GSE111443 | GEO

Gene expression in roots or shoots (wild-type, tga7)

Project description:To examine differential effect of the mutation of Arabidopsis TGA7 on the gene expressions, we performed microarray analysis using the shoots or the root of wild-type and tga7 mutant.

2025-05-23 | GSE270871 | GEO

Degradome sequencing in Medicago truncatula roots (Glomus intraradices colonized and non-colonized)

Project description:Identification of microRNA targets in M. truncatula roots

2011-06-16 | GSE26217 | GEO

Expression data of Medicago truncatula Jemalong A17 roots treated with auxin transport inhibitors

Project description:Rhizobium and allied bacteria form symbiotic nitrogen-fixing nodules on legume roots. Plant hormones appear to play a role in nodule formation. We treated Medicago truncatula roots with auxin transport inhibitors (ATIs) N-(1-naphthyl)phthalamic acid (NPA) and 2,3,5-triiodobenzoic acid (TIBA) to induce the formation of pseudonodules. We compared the transcriptional responses of M. truncatula roots treated with ATIs to roots inoculated with Sinorhizobium meliloti. The transcriptional response of M. truncatula roots 1 and 7 days after ATI treatment were opposite to roots treated with S. meliloti.

2011-03-26 | GSE27991 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data