Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Methylomicrobium sp. Wu6

ABSTRACT: Methylomicrobium sp. Wu6 genome sequencing and assembly

PROVIDER: PRJNA1051559 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR27397163_1.fastq.gz	Fastqsanger.gz
	SRR27397163_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Methylomicrobium

Project description:Methylomicrobium sp. overview

| PRJNA1060831 | ENA

Methylomicrobium lacus LW14

Project description:Methylomicrobium lacus LW14 Genome sequencing and assembly

| PRJNA161599 | ENA

Methylomicrobium album BG8

Project description:Methylomicrobium album BG8 genome sequencing project

| PRJNA51783 | ENA

Candidatus Methylomicrobium oryzae strain:RS1

Project description:Candidatus Methylomicrobium oryzae strain:RS1 Genome sequencing and assembly

| PRJNA690655 | ENA

Methylomicrobium agile strain:ATCC 35068

Project description:Methylomicrobium agile strain:ATCC 35068 Genome sequencing and assembly

| PRJNA239499 | ENA

Project description:WTCCC2 project Schizophrenia (SP) samples

| EGAD00010000262 | EGA

Methylomicrobium lacus strain:22M6SE5-12

Project description:Methylomicrobium lacus strain:22M6SE5-12 Genome sequencing

| PRJNA1153416 | ENA

Methylomicrobium album BG8

Project description:Methylomicrobium album BG8 Transcriptome or Gene expression

| PRJNA259136 | ENA

OXYGEN-LIMITED METABOLISM IN THE METHANOTROPH METHYLOMICROBIUM BURYATENSE 5GB1C

Project description:The bacteria that grow on methane aerobically (methanotrophs) support populations of non-methanotrophs in the natural environment by excreting methane-derived carbon. One group of excreted compounds are short-chain organic acids, generated in highest abundance when cultures are grown under O2-starvation. We examined this O2-starvation condition in the methanotroph Methylomicrobium buryatense 5GB1C . Under prolonged O2-starvation in a closed vial, this methanotroph increases the amount of acetate excreted about 10-fold, but the formate, lactate, and succinate excreted do not respond to this culture condition. In bioreactor cultures, the amount of each excreted product is similar across a range of growth rates and limiting substrates, including O2-limitation. A set of mutants were generated in genes predicted to be involved in generating or regulating excretion of these compounds and tested for growth defects, and changes in excretion products. The phenotypes and associated metabolic flux modeling suggested that in M. buryatense 5GB1C, formate and acetate are excreted in response to redox imbalance, and the resulting metabolic state represents a combination of fermentation and respiration metabolism.

2017-08-24 | GSE101981 | GEO

Gene expression analysis of four conditions for Puccinia graminis f. sp. tritici

Project description:Puccinia graminis f. sp. tritici is the cause of wheat stem rust. A microarray was designed from genes predicted from the P. graminis f. sp. tritici genome assembly, and gene expression measured for four conditions which include wheat or barley infecting growth stages initiated by urediniospores. mRNA was prepared from fresh urediniospores, uredinospores germinated for 24 hr, wheat seedlings infected with urediniospores for 8 days, and barley seedlings infected with urediniospores for 8 days. The asexual uredinial infection cycle on wheat produces additional urediniospores, which can start new cycles of wheat infection and are readily spread by aerial transport. This expression data is further described in Duplessis et al, Obligate Biotrophy Features Unraveled by the Genomic Analysis of the Rust Fungi, Melampsora larici-populina and Puccinia graminis f. sp. tritici

2010-12-31 | GSE25020 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data