Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: ddRAD sequencing of Middle Eastern Zodarion spiders

PROVIDER: PRJNA1051571 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR27185900_1.fastq.gz	Fastqsanger.gz
	SRR27185900_2.fastq.gz	Fastqsanger.gz
	SRR27185901_1.fastq.gz	Fastqsanger.gz
	SRR27185901_2.fastq.gz	Fastqsanger.gz
	SRR27185873_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 58

Similar Datasets

Project description:ddRAD-seq of wolf spiders

| PRJNA345307 | ENA

Transcriptome for gene expression in Pardosa millvina based on predator exposure

Project description:We compare levels of gene expression in predator (Tigrosa helluo) exposed female Pardosa milvina compared to unexposed spiders and the offspring of predator exposed spiders to the offspring of control spiders.

2025-07-30 | GSE183738 | GEO

Single-cell transcriptomics reveals the brain evolution of web-building spiders

Project description:Spiders are renowned for their efficient capture of flying insects using intricate aerial webs. How the spider nervous systems evolved to cope with this specialized hunting strategy and various environmental clues in an aerial space remains unknown. Here, we report a brain cell atlas of >30,000 single-cell transcriptomes from a web-building spider (Hylyphantes graminicola). Our analysis revealed the preservation of ancestral neuron types in spiders, including the potential coexistence of noradrenergic and octopaminergic neurons, and many peptidergic neuronal types that are lost in insects. By comparing the genome of two newly sequenced plesiomorphic burrowing spiders with three aerial web-building spiders, we found that the positively selected genes in the ancestral branch of web-building spiders were preferentially expressed (42%) in the brain, especially in the three mushroom body-like neuronal types. By gene enrichment analysis and RNAi experiments, these genes were suggested to be involved in the learning and memory pathway and may influence the spiders’ web-building and hunting behavior. Our results provide key sources for understanding the evolution of behavior in spiders and reveal how molecular evolution drives neuron innovation and the diversification of associated complex behaviors.

2023-10-24 | GSE241696 | GEO

Palaeoproteomics and microanalysis reveal techniques of production of animal based metal threads in medieval textiles part II

Project description:Protein-based or animal-based metal threads were largely used between the 10th and the 15th centuries, in European, Middle Eastern and Far Eastern textile productions for the decoration of textiles and cloths to make a display of wealth, power and status. A total of 91 samples were collected from a corpus of 66 textile fragments belonging to 54 catalogued objects. Proteomics analysis allowed to determine the origin of the animal substrates, which were found to be from cattle membranes (possibly from gastrointestinal organs or bladder) in membrane strips, while in leather strips (possibly made from the corium or grain skin layer of the animals), goat (exclusively in Spanish samples) and sheep (in Middle Eastern/Italian and Far Eastern samples) were identified. Other protein-based components that made the strips were identified and associated to the adhesive binders.

2023-07-06 | MSV000092358 | MassIVE

Palaeoproteomics and microanalysis reveal techniques of production of animal based metal threads in medieval textiles

2023-07-06 | MSV000092355 | MassIVE

Single-cell RNA sequencing of major ampullate glands from adult female L. sclopetarius spiders

Project description:This dataset comprises single-cell RNA sequencing of 30 major ampullate gland samples isolated from 20 adult female L. sclopetarius spiders.

2024-05-15 | E-MTAB-14078 | biostudies-arrayexpress

Project description:ddRAD of eastern oyster (Crassostrea virginica)

| PRJNA789883 | ENA

Human Calu-3 cell transcriptome response to a wild type infectious clone of Middle Eastern Respiratory Syndrome (icMERS) coronavirus and icMERS mutant viruses

Project description:The purpose of this experiment was to obtain samples for transcriptome analysis using wild type infectious clone of Middle Eastern Respiratory Syndrome (icMERS) coronavirus and icMERS mutant viruses: icMERS-RFP, icMERS-dNSP16, icMERS-d4B, and icMERS-d3-5. For protocol details, please search for the protocol ID at https://systemsvirology.org.

2015-02-04 | GSE65574 | GEO

The Caucasus as an asymmetric semipermeable barrier to ancient human migrations

Project description:The Caucasus, inhabited by modern humans since the Early Upper Paleolithic and known for its linguistic diversity, is considered to be important for understanding human dispersals and genetic diversity in Eurasia. We report a synthesis of autosomal, Y chromosome, and mitochondrial DNA (mtDNA) variation in populations from all major subregions and linguistic phyla of the area. Autosomal genome variation in the Caucasus reveals significant genetic uniformity among its ethnically and linguistically diverse populations and is consistent with predominantly Near/Middle Eastern origin of the Caucasians, with minor external impacts. In contrast to autosomal and mtDNA variation, signals of regional Y chromosome founder effects distinguish the eastern from western North Caucasians. Genetic discontinuity between the North Caucasus and the East European Plain contrasts with continuity through Anatolia and the Balkans, suggesting major routes of ancient gene flows and admixture.

2012-04-18 | GSE37342 | GEO

Bulk RNA sequencing of silk gland samples isolated from adult female L. sclopetarius spiders

Project description:This dataset comprises bulk RNA sequencing of 12 silk gland samples isolated from adult female L. sclopetarius spiders. The samples include whole major ampullate glands (5 replicates), flagelliform glands (3), (aciniform + pyriform) glands (4).

2024-05-15 | E-MTAB-14073 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data