Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Populus tremula

ABSTRACT: Populus tremula Raw sequence reads

PROVIDER: PRJNA1065827 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR27605500_1.fastq.gz	Fastqsanger.gz
	SRR27605500_2.fastq.gz	Fastqsanger.gz
	SRR27679200_1.fastq.gz	Fastqsanger.gz
	SRR27679200_2.fastq.gz	Fastqsanger.gz
	SRR27605501_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 596

Similar Datasets

Populus tremula x alba 717-1B4 Laccaria bicolor S238N ectomycorrhiza

Project description:Illumina technology was used to generate mRNA profiles of Populus tremula x alba 717-1B4 control roots and Laccaria bicolor S238N ectomycorrhiza. Total RNA was extracted, TruSeq mRNA Stranded libraries were constructed and and sequenced (2 x 150 bp Illumina HiSeq3000) at the Genotoul sequencing facilities (Toulouse, France). Raw reads were trimmed for low quality (quality score 0.05), Illumina adapters and sequences shorter than 15 nucleotides and aligned to the Populus trichocarpa v4.1 primary transcripts available at Phytozome (https://phytozome-next.jgi.doe.gov/info/Ptrichocarpa_v4_1l) using CLC Genomics Workbench v24.

2025-07-15 | GSE287497 | GEO

Time Course of Laccaria bicolor S238N and Populus tremula x alba 717-1B4 in vitro ectomycorrhizal development

Project description:Illumina technology was used to generate mRNA profiles of a time course of Laccaria bicolor S238N and Populus tremula x alba 717-1B4 in vitro ectomycorrhizal development. Total RNA was extracted, TruSeq mRNA Stranded libraries were constructed and and sequenced in triplicates (2 x 150 bp Illumina HiSeq3000) at the Genotoul sequencing facilities (Toulouse, France). Raw reads were trimmed for low quality (quality score 0.05), Illumina adapters and sequences shorter than 15 nucleotides and aligned to the L. bicolor v2 reference transcripts available at the JGI database https://mycocosm.jgi.doe.gov/Lacbi2/Lacbi2.home.html using CLC Genomics Workbench v8.

2021-12-15 | GSE190443 | GEO

Single nuclei transcriptomic of Populus tremula x alba apex

Project description:Here we applied a novel approach to isolate nuclei from complex plant tissues (https://doi.org/10.1371/journal.pone.0251149), to dissect the transcriptome profiling of the hybrid poplar (Populus tremula × alba) vegetative shoot apex at single-cell resolution.

2022-10-04 | GSE190649 | GEO

Populus tremula

Project description:Populus tremula Raw sequence reads

| PRJNA297202 | ENA

24-hour herbivory exposure of VHb-expressing Populus tremula x Populus tremuloides

Project description:The expression of stress-related genes induced by feeding of chestnut moth larvae (Conistra vaccinii L.) was studied with Vitreoscilla hemoglobin-expressing (VHb) and non-transgenic hybrid aspen lines (Populus tremula x P. tremuloides). Besides the herbivore-injured leaves (L1), cDNA microarray analyses were conducted using uninjured leaves of hybrid aspen lines positioned above (A) and below (B) the herbivory exposed leaves.

2013-04-24 | GSE46331 | GEO

Populus tremula (European aspen) shows no evidence of sexual dimorphism in gene expression, phenotype, secondary defence or herbivory

Project description:We profiled gene expression and phenotypic traits in Populus tremula to examine evidence of sexual dimorphism and sex biased gene expression.

2013-04-20 | GSE46219 | GEO

Populus tremula x Populus alba

Project description:Populus tremula x Populus alba Raw sequence reads

| PRJNA631839 | ENA

Populus tremula x Populus alba

Project description:Populus tremula x Populus alba Raw sequence reads

| PRJNA516415 | ENA

Populus tremula x Populus alba

Project description:Populus tremula x Populus alba Raw sequence reads

| PRJNA694035 | ENA

Populus tremula x Populus alba

Project description:Populus tremula x Populus alba Raw sequence reads