Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcriptome sequencing of phaseolus vulgaris pods and grains

ABSTRACT: Transcriptome sequencing of phaseolus vulgaris pods and grains

PROVIDER: PRJNA1066741 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR27644878_1.fastq.gz	Fastqsanger.gz
	SRR27644878_2.fastq.gz	Fastqsanger.gz
	SRR27644879_1.fastq.gz	Fastqsanger.gz
	SRR27644879_2.fastq.gz	Fastqsanger.gz
	SRR27644880_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

Transcriptome sequencing of phaseolus vulgaris pods and grains

Project description:A total of 18 samples were selected from 4 periods during the growth of phaseolus vulgaris pods and grains, and total RNA was extracted respectively for transcriptome sequencing and functional detection of the corresponding genes, which laid a certain data foundation for subsequent studies.

2025-01-20 | GSE253669 | GEO

Transcriptome Characterization of developing bean (Phaseolus vulgaris L.) pods from two genotypes with contrasting seed zinc concentrations.

Project description:Dry bean (Phaseolus vulgaris L.) seeds are a rich source of dietary zinc, especially for people consuming plant-based diets. Within P. vulgaris there is at least two-fold variation in seed Zn concentration. Genetic studies have revealed seed Zn differences to be controlled by a single gene in two closely related navy bean genotypes, Albion and Voyager. In this study, these two genotypes were grown under controlled fertilization conditions and the Zn concentration of various plant parts were determined. The two genotypes had similar levels of Zn in their leaves and pods but Voyager had 52% more Zn in its seeds than Albion. RNA was sequence from developing pods of both genotypes. Transcriptome analysis of these genotypes identified 27,198 genes in the developing bean pods, representing 86% of the genes in the P. vulgaris genome (v 1.0 DOE-JGI and USDA-NIFA). Expression was detected in 18,438 genes. A relatively small number of genes (381) were differentially expressed between Albion and Voyager. Differentially expressed genes included three genes potentially involved in Zn transport, including zinc-regulated transporter, iron regulated transporter like (ZIP), zinc-induced facilitator (ZIF) and heavy metal associated (HMA) family genes. In addition 12,118 SNPs were identified between the two genotypes. Of the gene families related to Zn and/or Fe transport, eleven genes were found to contain SNPs between Albion and Voyager.

2015-03-24 | GSE67121 | GEO

Transcriptome of Phaseolus vulgaris nectaries and leaves

Project description:Comparative RNA-Seq study of expression in Phaseolus vulgaris nectaries

2018-04-10 | GSE112944 | GEO

Pod development transcriptomes of four Phaseolus vulgaris accesions

Project description:The goal of this study was to detemine the genes responsible of the pod indehiscence in Phaseolus vulgaris by comparing 4 accesions with total, middle and null dehiscence transcriptomes of three stages of pod develoment of Phaseolus vulgaris

2022-04-16 | GSE179985 | GEO

Phaseolus vulgaris

Project description:Phaseolus vulgaris

| PRJNA12932 | ENA

Epigenomics of Phaseolus vulgaris

Project description:Cytosine methylation is a base modification that is often used by genomes to store information that is stably inherited through mitotic cell divisions. Most cytosine DNA methylation is stable throughout different cell types or by exposure to different environmental conditions in plant genomes. Here, we profile the epigenomes of ~100 Phaseolus vulgaris lines to explore the extent of natural epigenomic variation. We also use these data to determine the extent to which DNA methylation variants are linked to genetic variations.

2018-05-11 | GSE114341 | GEO