Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Solanum pennellii

ABSTRACT: Solanum pennellii Transcriptome or Gene expression

PROVIDER: PRJNA1074291 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR27903360_1.fastq.gz	Fastqsanger.gz
	SRR27903360_2.fastq.gz	Fastqsanger.gz
	SRR27903361_1.fastq.gz	Fastqsanger.gz
	SRR27903361_2.fastq.gz	Fastqsanger.gz
	SRR27903362_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Solanum pennellii

Project description:Solanum pennellii overview

| PRJNA237050 | ENA

Solanum pennellii

Project description:Solanum pennellii (LA716) X Solanum pennellii (LA3778) F2 mapping population

| PRJNA557135 | ENA

Solanum pennellii

Project description:Solanum pennellii Raw sequence reads

| PRJNA438780 | ENA

Tomato Solanum lycopersicum and Solanum pennellii

Project description:Transcriptome of Solanum lycopersicum and Solanum pennellii under abiotic stresses

| PRJNA641520 | ENA

Genome of Solanum Pennellii

Project description:Sequencing the genome of Solanum Pennellii

| PRJEB5809 | ENA

Solanum pennellii strain:LA0716

Project description:Solanum pennellii strain:LA0716 Genome sequencing

| PRJNA214472 | ENA

Solanum pennellii cultivar:LA0716

Project description:Solanum pennellii cultivar:LA0716 Raw sequence reads

| PRJNA439009 | ENA

Solanum pennellii isolate:LA0716

Project description:Solanum pennellii isolate:LA0716 Raw sequence reads

| PRJNA312790 | ENA

Pollen tube proteomics of Solanum lycopersicum and S. pennellii

Project description:To identify candidate genes for the pui6.2 and pui12.1 loci, we performed a comparative proteomic analysis of pollen tube proteins from S. lycopersicum Heinz and S. pennellii LA0716.

2025-02-03 | PXD059928 | Pride

Multiscale gene expression profiling of 1 cm root tips of control and submerged Oryza sativa, Medicago truncatula, Solanum lycopersicum and Solanum pennellii seedlings

Project description:Climate change has increased the frequency and intensity of floods that impact global agricultural productivity. To better understand the response mechanisms and evolutionary history of gene family member regulation across angiosperm phyla, we studied the rapid submergence response of rice, the legume Medicago truncatula, and two Solanum species, domesticated tomato (S. lycopersicum cv. M82) and its dryland-adapted wild relative S. pennellii. Response to hypoxic conditions was measured by analyzing transcriptional and post-translational regulation in root tips of each species. This was achieved by the use of Nuclei Tagged in specific Cell Types (INTACT) and Translating Ribosome Affinity Purification to obtain chromatin and sub-populations of gene transcripts. (1) Chromatin accessibility was evaluated by coupling INTACT with ATAC-seq (assay for Transposon-Accessible Chromatin). (2) INTACT was used to capture nuclear RNA (nRNA). (3) Polyadenylated mRNA (polyA RNA) was obtained by standard oligo(dT) selection. (4) Ribosome-associated polyA mRNA (polyA RNA) was obtained by use of Translating Ribosome Affinity Purification (TRAP). Ribosome footprinting (Ribo-seq) was accomplished by using TRAP to capture ribosome protected fragments after RNAseI digestion. Samples evaluated include the apical root tip (four species) and shoot region (Solanum species only) under control conditions and after 2 h of submergence

2019-09-19 | GSE128680 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data